LOCUS BC004372 2387 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens CD44 molecule (Indian blood group), mRNA (cDNA clone MGC:10468 IMAGE:3638681), complete cds. ACCESSION BC004372 VERSION BC004372.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2387) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2387) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (12-MAR-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 13 Row: p Column: 10 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 48255942. FEATURES Location/Qualifiers source 1..2387 /db_xref="H-InvDB:HIT000031897" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:10468 IMAGE:3638681" /tissue_type="Pancreas, adenocarcinoma" /clone_lib="NIH_MGC_39" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..2387 /gene="CD44" /gene_synonym="CDW44" /gene_synonym="ECMR-III" /gene_synonym="HCELL" /gene_synonym="IN" /gene_synonym="LHR" /gene_synonym="MC56" /gene_synonym="MGC10468" /gene_synonym="MUTCH-I" /gene_synonym="Pgp1" /db_xref="GeneID:960" /db_xref="HGNC:HGNC:1681" /db_xref="MIM:107269" CDS 132..2231 /gene="CD44" /gene_synonym="CDW44" /gene_synonym="ECMR-III" /gene_synonym="HCELL" /gene_synonym="IN" /gene_synonym="LHR" /gene_synonym="MC56" /gene_synonym="MGC10468" /gene_synonym="MUTCH-I" /gene_synonym="Pgp1" /codon_start=1 /product="CD44 molecule (Indian blood group)" /protein_id="AAH04372.1" /db_xref="GeneID:960" /db_xref="HGNC:HGNC:1681" /db_xref="MIM:107269" /translation="MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSI SRTEAADLCKAFNSTLPTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNT GVYILTSNTSQYDTYCFNASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGE YRTNPEDIYPSNPTDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDR IPATSTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDDEDFISSTISTTPRAFDHTK QNQDWTQWNPSHSNPEVLLQTTTRMTDVDRNGTTAYEGNWNPEAHPPLIHHEHHEEEE TPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPREDSHSTTGTAAASAHTSH PMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSTTLQPTANPNTGLVE DLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRNDVTGGRRDPNHSE GSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVNRSLSGDQDTF HPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALILAVC IAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSETPDQFM TADETRNLQNVDMKIGV" BASE COUNT 716 a 640 c 537 g 494 t ORIGIN 1 cctcgtgccg cggaccccag cctctgccag gttcggtccg ccatcctcgt cccgtcctcc 61 gccggcccct gccccgcgcc cagggatcct ccagctcctt tcgcccgcgc cctccgttcg 121 ctccggacac catggacaag ttttggtggc acgcagcctg gggactctgc ctcgtgccgc 181 tgagcctggc gcagatcgat ttgaatataa cctgccgctt tgcaggtgta ttccacgtgg 241 agaaaaatgg tcgctacagc atctctcgga cggaggccgc tgacctctgc aaggctttca 301 atagcacctt gcccacaatg gcccagatgg agaaagctct gagcatcgga tttgagacct 361 gcaggtatgg gttcatagaa gggcatgtgg tgattccccg gatccacccc aactccatct 421 gtgcagcaaa caacacaggg gtgtacatcc tcacatccaa cacctcccag tatgacacat 481 attgcttcaa tgcttcagct ccacctgaag aagattgtac atcagtcaca gacctgccca 541 atgcctttga tggaccaatt accataacta ttgttaaccg tgatggcacc cgctatgtcc 601 agaaaggaga atacagaacg aatcctgaag acatctaccc cagcaaccct actgatgatg 661 acgtgagcag cggctcctcc agtgaaagga gcagcacttc aggaggttac atcttttaca 721 ccttttctac tgtacacccc atcccagacg aagacagtcc ctggatcacc gacagcacag 781 acagaatccc tgctaccagt acgtcttcaa ataccatctc agcaggctgg gagccaaatg 841 aagaaaatga agatgaaaga gacagacacc tcagtttttc tggatcaggc attgatgatg 901 atgaagattt tatctccagc accatttcaa ccacaccacg ggcttttgac cacacaaaac 961 agaaccagga ctggacccag tggaacccaa gccattcaaa tccggaagtg ctacttcaga 1021 caaccacaag gatgactgat gtagacagaa atggcaccac tgcttatgaa ggaaactgga 1081 acccagaagc acaccctccc ctcattcacc atgagcatca tgaggaagaa gagaccccac 1141 attctacaag cacaatccag gcaactccta gtagtacaac ggaagaaaca gctacccaga 1201 aggaacagtg gtttggcaac agatggcatg agggatatcg ccaaacaccc agagaagact 1261 cccattcgac aacagggaca gctgcagcct cagctcatac cagccatcca atgcaaggaa 1321 ggacaacacc aagcccagag gacagttcct ggactgattt cttcaaccca atctcacacc 1381 ccatgggacg aggtcatcaa gcaggaagaa ggatggatat ggactccagt catagtacaa 1441 cgcttcagcc tactgcaaat ccaaacacag gtttggtgga agatttggac aggacaggac 1501 ctctttcaat gacaacgcag cagagtaatt ctcagagctt ctctacatca catgaaggct 1561 tggaagaaga taaagaccat ccaacaactt ctactctgac atcaagcaat aggaatgatg 1621 tcacaggtgg aagaagagac ccaaatcatt ctgaaggctc aactacttta ctggaaggtt 1681 atacctctca ttacccacac acgaaggaaa gcaggacctt catcccagtg acctcagcta 1741 agactgggtc ctttggagtt actgcagtta ctgttggaga ttccaactct aatgtcaatc 1801 gttccttatc aggagaccaa gacacattcc accccagtgg ggggtcccat accactcatg 1861 gatctgaatc agatggacac tcacatggga gtcaagaagg tggagcaaac acaacctctg 1921 gtcctataag gacaccccaa attccagaat ggctgatcat cttggcatcc ctcttggcct 1981 tggctttgat tcttgcagtt tgcattgcag tcaacagtcg aagaaggtgt gggcagaaga 2041 aaaagctagt gatcaacagt ggcaatggag ctgtggagga cagaaagcca agtggactca 2101 acggagaggc cagcaagtct caggaaatgg tgcatttggt gaacaaggag tcgtcagaaa 2161 ctccagacca gtttatgaca gctgatgaga caaggaacct gcagaatgtg gacatgaaga 2221 ttggggtgta acacctacac cattatcttg gaaagaaaca accgttggaa acataaccat 2281 tacagggagc tgggacactt aacagatgca atgtgctact gattgtttca ttgcgaatct 2341 tttttagcat aaaattttct actcttaaaa aaaaaaaaaa aaaaaaa //