LOCUS BC004321 2034 bp mRNA linear HUM 16-SEP-2003
DEFINITION Homo sapiens protocadherin gamma subfamily C, 3, mRNA (cDNA clone
IMAGE:3628247), complete cds.
ACCESSION BC004321
VERSION BC004321.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2034)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2034)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield,
Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin,
Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo
Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven
Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline
Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott,
Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy,
George Yang, Scott Zuyderduyn, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 13 Row: m Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..2034
/db_xref="H-InvDB:HIT000031863"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3628247"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2034
/gene="PCDHGC3"
/gene_synonym="PC43"
/gene_synonym="PCDH-GAMMA-C3"
/gene_synonym="PCDH2"
/db_xref="GeneID:5098"
/db_xref="MIM:603627"
CDS 34..216
/gene="PCDHGC3"
/gene_synonym="PC43"
/gene_synonym="PCDH-GAMMA-C3"
/gene_synonym="PCDH2"
/codon_start=1
/product="PCDHGC3 protein"
/protein_id="AAH04321.1"
/db_xref="GeneID:5098"
/db_xref="MIM:603627"
/translation="MGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAP
AGGNGNKKKSGKKEKK"
BASE COUNT 454 a 618 c 516 g 446 t
ORIGIN
1 gggagctcca ccctgggagg gggtgccggc accatgggat tgagcgcccg ctacggaccc
61 cagttcaccc tgcagcacgt gcccgactac cgccagaatg tctacatccc aggcagcaat
121 gccacactga ccaacgcagc tggcaagcgg gatggcaagg ccccagcagg tggcaatggc
181 aacaagaaga agtcgggcaa gaaggagaag aagtaacatg gaggccaggc caagagccac
241 agggcggcct ctccccaacc agcccagctt ctccttacct gcacccaggc ctcagagttt
301 cagggctaac ccccagaata ctggtagggg ccaaggccat gctccccttg ggaaacagaa
361 acaagtgccc agtcagcacc taccccttcc cccccagggg gttgaatatg caaaagcagt
421 tccgctggga acccccatcc aatcaactgc tgtacccatg ggggtagtgg ggttactgta
481 gacaccaaga accatttgcc acaccccgtt tagttacagc tgaactcctc catcttccaa
541 atcaatcagg cccatccatc ccatgcctcc ctcctcccca ccccactcca acagttcctc
601 tttcccgagt aaggtggttg gggtgttgaa gtaccaagta acctacaagc ctcctagttc
661 tgaaaagttg gaagggcatc atgacctctt ggcctctcct ttgattctca atcttccccc
721 aaagcatggt ttggtgccag ccccttcacc tccttccaga gcccaagatc aatgctcaag
781 ttttggagga catgatcacc atccccatgg tactgatgct tgctggattt agggagggca
841 ttttgctacc aagcctcttc ccaacgccct ggggaccagt cttctgtttt gtttttcatt
901 gtttgacgtt tccactgcat gccttgactt cccccacctc ctcctcaaac aagagactcc
961 actgcatgtt ccaagacagt atggggtggt aagataagga agggaagtgt gtggatgtgg
1021 atggtggggg catggacaaa gcttgacaca tcaagttatc aaggccttgg aggaggctct
1081 gtatgtcctc aggggactga caacatcctc cagattccag ccataaacca ataactaggc
1141 tggacccttc ccactacata atagggctca gcccaggcag ccagctttgg gctgagctaa
1201 caggaccaat ggattaaact ggcatttcag tccaaggaag ctcgaagcag gtttaggacc
1261 aggtcccctt gagaggtcag aggggcctct gtgggtgctg ggtactccag aggtgccact
1321 ggtggaaggg tcagcggagc cccagcagga agggtgggcc agccaggcca ttcttagtcc
1381 ctgggttggg gaggcaggga gctagggcag ggaccaaatg aacagaaagt ctcagcccag
1441 gatggggctt cttcaacagg gcccctgccc tcctgaagcc tcagtccttc accttgccag
1501 gtgccgtttc tcttccgtga aggccactgc ccaggtcccc agtgcgcccc ctagtggcca
1561 tagcctggtt aaagttcccc agtgcctcct tgtgcataga ccttcttctc ccaccccctt
1621 ctgcccctgg gtccccggcc atccagcggg gctgccagag aaccccagac ctgcccttac
1681 agtagtgtag cgccccctcc ctctttcggc tggtgtagaa tagccagtag tgtagtgcgg
1741 tgtgctttta cgtgatggcg ggtgggcagc gggcggcggg ctccgcgcag ccgtctgtcc
1801 ttgatctgcc cgcggcggcc cgtgttgtgt tttgtgctgt gtccacgcgc taaggcgacc
1861 ccctcccccg tactgacttc tcctataagc gcttctcttc gcatagtcac gtagctccca
1921 ccccaccctc ttcctgtgtc tcacgcaagt tttatactct aatatttata tggctttttt
1981 tcttcgacaa aaaaataata aaacgtttct tctgaaaaaa aaaaaaaaaa aaaa
//