LOCUS BC004309 1861 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens RAB4A, member RAS oncogene family, mRNA (cDNA clone
MGC:10912 IMAGE:3627110), complete cds.
ACCESSION BC004309
VERSION BC004309.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1861)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1861)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 13 Row: g Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 19923259.
FEATURES Location/Qualifiers
source 1..1861
/db_xref="H-InvDB:HIT000031858"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:10912 IMAGE:3627110"
/tissue_type="Uterus, endometrium adenocarcinoma"
/clone_lib="NIH_MGC_44"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1861
/gene="RAB4A"
/db_xref="GeneID:5867"
/db_xref="HGNC:HGNC:9781"
/db_xref="MIM:179511"
CDS 209..865
/gene="RAB4A"
/codon_start=1
/product="RAB4A, member RAS oncogene family"
/protein_id="AAH04309.1"
/db_xref="GeneID:5867"
/db_xref="HGNC:HGNC:9781"
/db_xref="MIM:179511"
/translation="MSQTAMSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNH
TIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYN
ALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTG
ENVEEAFVQCARKILNKIESGELDPERMGSGIQYGDAALRQLRSPRRAQAPNAQECGC
"
BASE COUNT 515 a 392 c 432 g 522 t
ORIGIN
1 gccggacgga gggtggaggg ccctgcgcct gcgcggagct ggagtccggc tgggccgcag
61 ccgctgggag accggcggtt gccgtgggga ccggtcgggc ccctccctcc tccggtcccc
121 cgccccaggc ccttccccac cgagacgcgc cggcggaccg cgggcgagtg cagccggtga
181 cccggcgaga ggcggcgccg ctcccaagat gtcgcagacg gccatgtccg aaacctacga
241 ttttttgttt aagttcttgg ttattggaaa tgcaggaact ggcaaatctt gcttacttca
301 tcagtttatt gaaaaaaaat tcaaagatga ctcaaatcat acaataggag tggaatttgg
361 ttcaaagata ataaatgttg gtggtaaata tgtaaagtta caaatatggg atacagcagg
421 acaagaacga ttcaggtccg tgacgagaag ttattaccga ggcgcggccg gggctctcct
481 cgtctatgat atcaccagcc gagaaaccta caatgcgctt actaattggt taacagatgc
541 ccgaatgcta gcgagccaga acattgtgat catcctttgt ggaaacaaga aggacctgga
601 tgcagatcgt gaagttacct tcttagaagc ctccagattt gctcaagaaa atgagctgat
661 gtttttggaa acaagtgcgc tcacagggga gaatgtagaa gaggcttttg tacagtgtgc
721 aagaaaaata cttaacaaaa tcgaatcagg tgagctggac ccagaaagaa tgggctcagg
781 tattcagtac ggagatgctg ccttgagaca gctgaggtca ccgcggcgcg cacaggcccc
841 gaacgctcag gagtgtggtt gttaggagag cacacaggtg ttcatacagt ggcatttggg
901 acacaatcgt tggaacctga agaatctgaa gtttttttta ccaccatctt tttctactct
961 gtatggaagt agatctttat ggggaaaaga gaatttgggg tgttctgcaa gccagtcaaa
1021 gtggcacagc aaatcatata aatcgaatta aatggacaac accgttagat gtgtatgtaa
1081 aaattttctg tttcatattt ttcctttcac tttcggttta aaacatgcta tatgtactgt
1141 atgtcctgta gcccagtgcg gctccacagc atggaatctg atgtatgata tgatagaatg
1201 tggcactaaa tgcagtttca gattttattt tttttaatca tatgaactaa aattgtcaat
1261 tgtgaggtgt gcttttctca tcatgttggt tatattgcac aattggttat atttatgacc
1321 tgatattcaa agactctggc attgatagcc agtgtgtttt cttatttaac tccgtttact
1381 acattctaca tggtgtttac gtgatccaca cttgaaatac tagatcagta gacattcact
1441 aatataccaa aataaaatga aaaattgagt ttttccgtga actttatact gtccagctct
1501 gttgatttta aagcctcttc atccaggtca gttcaggaag tatatctgga gtacctgctc
1561 tgtttttggc tgtgagacta gcactaagga ttctggtacc tttacccaaa cctactgggc
1621 tactaatact tctctcagca gttgatcaaa tacaatagac catgtaagct ggggccgctc
1681 atccacttcc agtttgctgg tctccctgct agaaaacaca ttgtactgtg ctttttctgg
1741 aattcagtat aatggcatca ctgcctgttt ttcacatctt ttgtttcctg ttcattttaa
1801 ggaaacctac taaatccagt taatattaaa tggacaccac tcaaaaaaaa aaaaaaaaaa
1861 a
//