LOCUS BC004303 1731 bp mRNA linear HUM 20-OCT-2005
DEFINITION Homo sapiens TRIO and F-actin binding protein, mRNA (cDNA clone
IMAGE:3623592), partial cds.
ACCESSION BC004303
VERSION BC004303.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1731)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1731)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 13 Row: m Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..1731
/db_xref="H-InvDB:HIT000086329"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3623592"
/tissue_type="Pancreas, adenocarcinoma"
/clone_lib="NIH_MGC_39"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1731
/gene="TRIOBP"
/gene_synonym="dJ37E16.4"
/gene_synonym="HRIHFB2122"
/gene_synonym="KIAA1662"
/gene_synonym="Tara"
/db_xref="GeneID:11078"
/db_xref="HGNC:HGNC:17009"
/db_xref="IMGT/GENE-DB:17009"
/db_xref="MIM:17009"
CDS <1..1368
/gene="TRIOBP"
/gene_synonym="dJ37E16.4"
/gene_synonym="HRIHFB2122"
/gene_synonym="KIAA1662"
/gene_synonym="Tara"
/codon_start=1
/product="TRIOBP protein"
/protein_id="AAH04303.1"
/db_xref="GeneID:11078"
/db_xref="HGNC:HGNC:17009"
/db_xref="IMGT/GENE-DB:17009"
/db_xref="MIM:17009"
/translation="LKAGEQRAGSEVISRGGPRKADGQRQALDYVELSPLTQASPQRA
RTPARTPDRLAKQEELERDLAQRSEERRKWFEATDSRTPEVPAGEGPRRGLGAPLTED
QQNRLSEEIEKKWQELEKLPLRENKRVPLTALLNQSRGERRGPPSDGHEALEKEVQAL
RAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQEACERSLAEMESSHQQVMEELQRHH
ERELQRLLQEKEWLLAEETAATASAIEAMKKAYQEELSRELSKTRSLQQGPDGLRKQH
QSDVEALKRELQVLSEQYSQKCLEIGALMRQAEEREHTLRRCQQEGQELLRHNQELHG
RLSEEIDQLRGFIASQGMGNGCGRSNERSSCELEHLYPQVLLRVKENELQYLKKEVQC
LRDELQMMQKDKRFTSGKYQDVYVELSHIKTRSEREIEQLKEHLRLAMAALQEKESMR
NSLAE"
BASE COUNT 414 a 520 c 543 g 254 t
ORIGIN
1 ctgaaggcag gggagcagcg ggcgggctct gaggtcatca gccggggtgg ccctcggaag
61 gcggacgggc agcgtcaggc cttggactac gtggagctct cgccgctgac ccaggcttcc
121 ccgcagcggg cccgcacccc agcccgcact cctgaccgcc tggccaagca ggaggagctg
181 gagcgggacc tggcccagcg ctccgaggag cggcgcaagt ggtttgaggc cacagacagc
241 aggaccccag aggtgcctgc tggtgagggg ccgcgccggg gcctgggtgc ccccctgact
301 gaggaccagc aaaaccggct tagtgaggag atcgagaaga agtggcagga gctggagaag
361 ctgcccctgc gggagaataa gcgggtgccc ctcactgccc tgctcaacca aagccgcgga
421 gagcgccgag ggcccccaag tgacggccac gaggcactgg agaaggaggt tcaggctctt
481 cgggcccagc tggaggcgtg gcgtctccaa ggggaggctc ctcagagtgc actgagatcc
541 caggaggatg gccacatccc cccgggctac atctcacagg aggcatgtga gcgcagcctg
601 gcagagatgg agtcctcgca ccagcaggtg atggaggagc tgcagcggca ccacgagcgg
661 gagctgcagc gcctgctgca ggagaaggag tggctcctgg ctgaggagac ggcagccacg
721 gcctcagcca ttgaagccat gaagaaggcc tatcaggaag agctgagccg agagctgagc
781 aaaacacgga gtctccagca gggcccggat ggcctccgga agcagcacca gtcagatgtg
841 gaggcactga agcgagagct gcaggtgcta tcggagcagt actcgcagaa gtgcctggag
901 attggggcac tcatgcggca ggctgaggag cgcgagcaca cgctgcgccg ctgccagcag
961 gagggccagg agctgctgcg ccacaaccag gagctgcatg gccgcctgtc agaggagata
1021 gaccagctgc gcggcttcat tgcctcgcag ggcatgggca atggctgcgg gcgcagcaac
1081 gagcggagtt cctgcgagct agagcaccta tatccccagg tgctgcttcg cgtaaaagaa
1141 aacgaactcc agtacctaaa gaaggaggtg cagtgcctcc gggacgagct ccagatgatg
1201 cagaaggaca agcgcttcac ctcgggaaag taccaggacg tctatgtgga gctgagccac
1261 atcaagacac ggtctgagcg ggagatcgag cagctgaagg agcacctgcg tcttgccatg
1321 gccgccctcc aggagaagga gtcgatgcgc aacagcctgg ctgagtagag gtcccgccca
1381 gctgcagacc ctccaggctg gaggaccagc cgccctcctt ccctcctgga tggaagtaaa
1441 aagccaagct ttctccccac cctctgtggg ccacacgtgc acttgcaccc accacacaca
1501 cacacacaca cacacacaca cagacacaca gacacatacg cacacacgtg cacacatgta
1561 cacacggata cacacacaca cacacacaca cacactgcat atctgagcgc gcccctcgca
1621 ctgggtctca ccttgcacct tcttcaggat tttatatgtg aagagatttt tatatagatt
1681 tttttccttt ttttccaaaa cactttatac tttaaaaaaa aaaaaaaaaa a
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