LOCUS BC004273 1527 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens splicing factor 3b, subunit 4, 49kDa, mRNA (cDNA clone
MGC:10828 IMAGE:3615080), complete cds.
ACCESSION BC004273
VERSION BC004273.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1527)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1527)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 13 Row: j Column: 3.
FEATURES Location/Qualifiers
source 1..1527
/db_xref="H-InvDB:HIT000031835"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:10828 IMAGE:3615080"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1527
/gene="SF3B4"
/gene_synonym="MGC10828"
/gene_synonym="SAP49"
/gene_synonym="SF3b49"
/db_xref="GeneID:10262"
/db_xref="HGNC:HGNC:10771"
/db_xref="MIM:605593"
CDS 9..1283
/gene="SF3B4"
/gene_synonym="MGC10828"
/gene_synonym="SAP49"
/gene_synonym="SF3b49"
/codon_start=1
/product="splicing factor 3b, subunit 4, 49kDa"
/protein_id="AAH04273.1"
/db_xref="GeneID:10262"
/db_xref="HGNC:HGNC:10771"
/db_xref="MIM:605593"
/translation="MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHM
PKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANI
FIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE
AMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPP
SAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPP
SAGTPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPP
PRPPPGMPHPGPPPMGMPPRGPPFGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPP
PYGYQRGPLPPPRPTPRPPVPPRGPLRGPLPQ"
BASE COUNT 345 a 497 c 333 g 352 t
ORIGIN
1 ctttcgccat ggctgccggg ccgatctccg agcggaatca ggatgccact gtgtacgtgg
61 ggggcctgga tgagaaggtt agtgaaccgc tgctgtggga actgtttctc caggctggac
121 cagtagtcaa cacccacatg ccaaaggata gagtcactgg ccagcaccaa ggctatggct
181 ttgtggaatt cttgagtgag gaagatgctg actatgccat taagatcatg aacatgatca
241 aactctatgg gaagccaata cgggtgaaca aagcatcagc tcacaacaaa aacctggatg
301 taggggccaa cattttcatt gggaacctgg accctgagat tgatgagaag ttgctttatg
361 atactttcag cgcctttggg gtcatcttac aaacccccaa aattatgcgg gaccctgaca
421 caggcaactc caaaggttat gcctttatta attttgcttc atttgatgct tcggatgcag
481 caattgaagc catgaatggg cagtacctct gtaaccgtcc tatcaccgta tcttatgcct
541 tcaagaagga ctccaagggt gagcgccatg gctcagcagc cgaacgactt ctggcagctc
601 agaacccgct ctcccaggct gatcgccctc atcagctgtt tgcagatgca cctcctccac
661 cctctgctcc caatcctgtg gtatcatcat tggggtctgg gcttcctcca ccaggcatgc
721 ctcctcctgg ctccttccca cccccagtgc cacctcctgg agccctccca cctgggatac
781 ccccagccat gcccccacca cctatgcctc ctggggctgc aggacatggc cccccatcgg
841 caggaacccc aggggcagga catcctggtc atggacactc acatcctcac ccattcccac
901 cgggtgggat gccccatcca gggatgtctc agatgcagct tgcacaccat ggccctcatg
961 gcttaggaca tccccacgct ggacccccag gctctggggg ccagccaccg ccccgaccac
1021 cacctggaat gcctcatcct ggacctcctc caatgggcat gcccccccga gggcctccat
1081 tcggatctcc catgggtcac ccaggtccta tgcctccgca tggtatgcgt ggacctcctc
1141 cactgatgcc cccccatgga tacactggcc ctccacgacc cccaccctat ggctaccagc
1201 gggggcctct ccctccaccc agacccactc cccggccacc agttccccct cgaggcccac
1261 ttcgaggccc tctccctcag taaattcaca ttttccttcc tcctgttaca ttttcccaat
1321 atcttttcta ttccttggac caatcagaga tgctgtagct ccttggggca aaggtactaa
1381 tccctttcag cacccccact ccattcccct ttttaatgta actttttcca caggaggtat
1441 ttctttttta tgttggtcct gagtattttg caaatgcaca gagaaaataa aactaaactc
1501 cttgttaaaa aaaaaaaaaa aaaaaaa
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