LOCUS BC004270 3498 bp mRNA linear HUM 09-JUN-2008
DEFINITION Homo sapiens Ras association (RalGDS/AF-6) domain family member 5,
mRNA (cDNA clone MGC:10823 IMAGE:3613993), complete cds.
ACCESSION BC004270
VERSION BC004270.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3498)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3498)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 13 Row: n Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 32996732.
FEATURES Location/Qualifiers
source 1..3498
/db_xref="H-InvDB:HIT000031832"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:10823 IMAGE:3613993"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3498
/gene="RASSF5"
/gene_synonym="Maxp1"
/gene_synonym="NORE1"
/gene_synonym="NORE1A"
/gene_synonym="NORE1B"
/gene_synonym="RAPL"
/gene_synonym="RASSF3"
/db_xref="GeneID:83593"
/db_xref="HGNC:HGNC:17609"
/db_xref="MIM:607020"
CDS 64..1236
/gene="RASSF5"
/gene_synonym="Maxp1"
/gene_synonym="NORE1"
/gene_synonym="NORE1A"
/gene_synonym="NORE1B"
/gene_synonym="RAPL"
/gene_synonym="RASSF3"
/codon_start=1
/product="Ras association (RalGDS/AF-6) domain family
member 5"
/protein_id="AAH04270.1"
/db_xref="GeneID:83593"
/db_xref="HGNC:HGNC:17609"
/db_xref="MIM:607020"
/translation="MASPAIGQRPYPLLLDPEPPRYLQSLSGPELPPPPPDRSSRLCV
PAPLSTAPGAREGRSARRAARGNLEPPPRASRPARPLRPGLQQRLRRRPGAPRPRDVR
SIFEQPQDPRVPAERGEGHCFAELVLPGGPGWCDLCGREVLRQALRCTNCKFTCHPEC
RSLIQLDCSQQEGLSRDRPSPESTLTVTFSQNVCKPVEETQRPPTLQEIKQKIDSYNT
REKNCLGMKLSEDGTYTGFIKVHLKLRRPVTVPAGIRPQSIYDAIKEVNLAATTDKRT
SFYLPLDAIKQLHISSTTTVSEVIQGLLKKFMVVDNPQKFALFKRIHKDGQVLFQKLS
IADRPLYLRLLAGPDTEVLSFVLKENETGEVEWDAFSIPELQNFLSSWCIQIYLYY"
BASE COUNT 834 a 973 c 882 g 809 t
ORIGIN
1 cgggagtagc gcagtcgcca aagccgccgc tgccaaagct gccgccacta gccgggcatg
61 gccatggcgt ccccggccat cgggcagcgc ccgtacccgc tactcttgga ccccgagccg
121 ccgcgctatc tacagagcct gagcggcccc gagctaccgc cgccgccccc cgaccggtcc
181 tcgcgcctct gtgtcccggc gcccctctcc actgcgcccg gggcgcgcga ggggcgcagc
241 gcccggaggg ctgcccgggg gaacctggag cccccgcccc gggcctcccg acccgctcgc
301 ccgctccggc ctggtctgca gcagagactg cggcggcggc ctggagcgcc ccgaccccgc
361 gacgtgcgga gcatcttcga gcagccgcag gatcccagag tcccggcgga gcgaggcgag
421 gggcactgct tcgccgagtt ggtgctgccg ggcggccccg gctggtgtga cctgtgcgga
481 cgagaggtgc tgcggcaggc gctgcgctgc actaactgta aattcacctg tcacccagaa
541 tgccgcagcc tgatccagtt ggactgcagt cagcaggagg gtttatcccg ggacagaccc
601 tctccagaaa gcaccctcac cgtgaccttc agccagaatg tctgtaaacc tgtggaggag
661 acacagcgcc cgcccacact gcaggagatc aagcagaaga tcgacagcta caacacgcga
721 gagaagaact gcctgggcat gaaactgagt gaagacggca cctacacggg tttcatcaaa
781 gtgcatctga aactccggcg gcctgtgacg gtgcctgctg ggatccggcc ccagtccatc
841 tatgatgcca tcaaggaggt gaacctggcg gctaccacgg acaagcggac atccttctac
901 ctgcccctag atgccatcaa gcagctgcac atcagcagca ccaccaccgt cagtgaggtc
961 atccaggggc tgctcaagaa gttcatggtt gtggacaatc cccagaagtt tgcacttttt
1021 aagcggatac acaaggacgg acaagtgctc ttccagaaac tctccattgc tgaccgcccc
1081 ctctacctgc gcctgcttgc tgggcctgac acggaggtcc tcagctttgt gctaaaggag
1141 aatgaaactg gagaggtaga gtgggatgcc ttctccatcc ctgaacttca gaacttcctc
1201 tcctcctggt gcattcagat ttatttgtat tattaattat tattttgcaa cagacacttt
1261 ttctcaggac atctctggca ggtgcatttg tgcctgccca gcagttccag ctgtggcaaa
1321 agtctcttcc atggacaagt gtttgcacga gggttcagct gtgcccgccc ccaggctgtg
1381 ccccaccaca gattctgcca aggatcagaa ctcatgtgaa acaaacagct gacgtcctct
1441 ctcgatctgc aagcctttca ccaaccaaat agttgcctct ctcgtcacca aactggaacc
1501 tcacaccagc cggcaaagga aggaagaaag gttttagagc tgtgtgttct ttctctggca
1561 ttgattcctc tttgagttct cttacttgcc acgtacagga ccattattta tgagtgaaaa
1621 gttgtagcac attccttttg caggtctgag ctaagcccct gaaagcaggg taatgctcat
1681 aaaaggactg ttcccgcggc cccaaggtgc ctgttgttca cacttaaggg aagtttataa
1741 agctactggc cccagatgct cagggtaagg agcaccaaag ctgaggctgg ctcagagatc
1801 tccagagaag ctgcagcctg ccctggccct ggctctggcc ctggcccaca ttgcacatgg
1861 aaacccaaag gcatatatct gcgtatgtgt ggtacttagt cacatctttg tcaacaaact
1921 gttcgttttt aagttacaaa tttgaattta atgttgtcat catcgtcatg tgtttcccca
1981 aagggaagcc agtcattgac catttaaaaa gtctcctgct aagtatggaa atcagacagt
2041 aagagaaagc caaaaagcaa tgcagagaaa ggtgtccaag ctgtcttcag ccttccccag
2101 ctaaagagca gaggagggcc tgggctactt gggttcccca tcggcctcca gcactgcctc
2161 cctcctccca ctgcgactct gggatctcca ggtgctgccc aaggagttgc cttgattaca
2221 gagaggggag cctccaattc ggccaacttg gagtcctttc tgttttgaag catgggccag
2281 acccggcact gcgctcggag agccggtggg cctggcctcc ccgtcgacct cagtgccttt
2341 ttgttttcag agagaaatag gagtagggcg agtttgcctg aagctctgct gctggcttct
2401 cctgccagga agtgaacaat ggcggcggtg tgggagacaa ggccaggaga gcccgcgttc
2461 agtatgggtt gagggtcaca gacctccctc ccatctgggt gcctgagttt tgactccaat
2521 cagtgatacc agaccacatt gacagggagg atcaaattcc tgacttacat ttgcactggc
2581 ttcttgttta ggctgaatcc taaaataaat tagtcaaaaa attccaacaa gtagccagga
2641 ctgcagagac actccagtgc agagggagaa ggacttgtaa ttttcaaagc agggctggtt
2701 ttccaaccca gcctctgaga aaccatttct ttgctatcct ctgccttccc aagtccctct
2761 tgggtcggtt caagcccaag cttgttcgtg tagcttcaga agttccctct ctgacccagg
2821 ctgagtccat actgcccctg atcccagaag gaatgctgac ccctcgtcgt atgaactgtg
2881 catagtctcc agagcttcaa aggcaacaca agctcgcaac tctaagattt ttttaaacca
2941 caaaaaccct ggttagccat ctcatgctca gccttatcac ttccctccct ttagaaactc
3001 tctccctgct gtatattaaa gggagcaggt ggagagtcat tttccttcgt cctgcatgtc
3061 tctaacatta atagaaggca tggctcctgc tgcaaccgct gtgaatgctg ctgagaacct
3121 ccctctatgg ggatggctat tttatttttg agaaggaaaa aaaaagtcat gtatatatac
3181 acataaaggc atatagctat atataaagag ataagggtgt ttatgaaatg agaaaattat
3241 tggacaattc agactttact aaagcacagt tagacccaag gcctatgctg aggtctaaac
3301 ctctgaaaaa agtatagtat cgagtacccg ttccctccca gaggtgggag taactgctgg
3361 tagtgccttc tttggttgtg ttgctcagtg tgtaagtgtt tgtttccagg atattttctt
3421 tttaaatgtc tttcttatat gggttttaaa aaaaagtaat aaaagcctgt tgcaaaaatg
3481 aaaaaaaaaa aaaaaaaa
//