LOCUS BC004220 1508 bp mRNA linear HUM 25-NOV-2003 DEFINITION Homo sapiens agrin, mRNA (cDNA clone IMAGE:3506210), partial cds. ACCESSION BC004220 VERSION BC004220.2 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1508) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1508) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (01-MAR-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Nov 6, 2003 this sequence version replaced BC004220.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 11 Row: c Column: 7 This clone was selected for full length sequencing because it passed the following selection criteria: Hexamer frequency ORF analysis. FEATURES Location/Qualifiers source 1..1508 /db_xref="H-InvDB:HIT000086308" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:3506210" /tissue_type="Kidney, renal cell adenocarcinoma" /clone_lib="NIH_MGC_14" /lab_host="DH10B-R" /note="Vector: pOTB7" gene <1..1508 /gene="AGRN" /gene_synonym="FLJ45064" /db_xref="GeneID:375790" /db_xref="MIM:103320" CDS <1..351 /gene="AGRN" /gene_synonym="FLJ45064" /codon_start=1 /product="AGRN protein" /protein_id="AAH04220.2" /db_xref="GeneID:375790" /db_xref="MIM:103320" /translation="LSYNLGSQPVVLRSTVPVNTNRWLRVVAHREQREGSLQVGNEAP VTGSSPLGATQLDTDGALWLGGLPELPVGPALPKAYGTGFVGCLRDVVVGRHPLHLLE DAVTKPELRPCPTP" misc_feature 1..297 /gene="AGRN" /gene_synonym="FLJ45064" /note="laminin_G; Region: Laminin G domain" /db_xref="CDD:pfam00054" BASE COUNT 264 a 487 c 451 g 306 t ORIGIN 1 ctgagctaca acctgggctc ccagcccgtg gtgctgcgtt ccaccgtgcc cgtcaacacc 61 aaccgctggt tgcgggtcgt ggcacatagg gagcagaggg aaggttccct gcaggtgggc 121 aatgaggccc ctgtgaccgg ctcctccccg ctgggcgcca cgcagctgga cactgatgga 181 gccctgtggc ttgggggcct gccggagctg cccgtgggcc cagcactgcc caaggcctac 241 ggcacaggct ttgtgggctg cttgcgggat gtggtggtgg gccggcaccc gctgcacctg 301 ctggaggacg ccgtcaccaa gccagagctg cggccctgcc ccaccccatg agctggcacc 361 agagccccgc gcccgctgta attattttct atttttgtaa acttgttgct ttttgatatg 421 attttcttgc ctgagtgttg gccggaggga ctgctggccc ggcctccctt ccgtccaggc 481 agccgtgctg cagacagacc tagtgctgag ggatggacag gcgaggtggc agcgtggagg 541 gctcggcgtg gatggcagcc tcaggacaca cacccctgcc tcaaggtgct gagcccccgc 601 cttgcactgc gcctgcccca cggtgtcccc gccgggaagc agccccggct ccttaatcac 661 cctcgctccg tcaggcggga ctcgtgtccc agagaggaag gggctgctga ggtctgatgg 721 ggcccttcct ccgggtgacc ccacagggcc tttccaagcc cctatttgag ctgctccttc 781 ctgtgtgtgc tctggaccct gcctcggcct cctgcgccaa tactgtgact tccaaacaat 841 gttactgctg ggcacagctc tgcgttgctc ccgtgctgcc tgcgccagcc ccaggctgct 901 gaggagcaga ggccagacca gggccgatct gggtgtcctg accctcagct ggccctgccc 961 agccaccctg gacatgaccg tatccctctg ccacacccca ggccctgcga ggggctatcg 1021 agaggagctc actgtgggat ggggttgacc tctgccgcct gcctgggtat ctgggcctgg 1081 ccatggctgt gttcttcatg tgttgatttt atttgacccc tggagtggtg ggtctcatct 1141 ttcccatctc gcctgagagc ggctgagggc tgcctcactg caaatcctcc ccacagcgtc 1201 agtgaaagtc gtccttgtct cagaatgacc aggggccagc cagtgtctga ccaaggtcaa 1261 ggggcaggtg cagaggtggc agggatggct ccgaagccag aaatgcctta aactgcaacg 1321 tcccgtccct tccccacccc catcccatcc ccacccccag ccccagccca gtcctcctag 1381 gagcaggacc cgatgaagcg ggcggcggtg gggctgggtg ccgtgttact aactctagta 1441 tgtttctgtg tcaatcgctg tgaaataaag tctgaaaact ttaaaaaaaa aaaaaaaaaa 1501 aaaaaaaa //