LOCUS BC003618 2248 bp mRNA linear HUM 06-JUN-2006
DEFINITION Homo sapiens TRIO and F-actin binding protein, mRNA (cDNA clone
IMAGE:2988379), complete cds.
ACCESSION BC003618
VERSION BC003618.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2248)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2248)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC003618.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 3 Row: f Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 30474869
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..2248
/db_xref="H-InvDB:HIT000031647"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:2988379"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_15"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2248
/gene="TRIOBP"
/gene_synonym="dJ37E16.4"
/gene_synonym="HRIHFB2122"
/gene_synonym="KIAA1662"
/gene_synonym="TARA"
/db_xref="GeneID:11078"
/db_xref="HGNC:HGNC:17009"
/db_xref="MIM:609761"
CDS 104..1885
/gene="TRIOBP"
/gene_synonym="dJ37E16.4"
/gene_synonym="HRIHFB2122"
/gene_synonym="KIAA1662"
/gene_synonym="TARA"
/codon_start=1
/product="TRIOBP protein"
/protein_id="AAH03618.1"
/db_xref="GeneID:11078"
/db_xref="HGNC:HGNC:17009"
/db_xref="MIM:609761"
/translation="MTPDLLNFKKGWMSILDEPGEPPSPSLTTTSTSQWKKHWFVLTD
SSLKYYRDSTAEEADELDGEIDLRSCTDVTEYAVQRNYGFQIHTKDAVYTLSAMTSGI
RRNWIEALRKTVRPTSAPDVTKLSDSNKENALHSYSTQKGPLKAGEQRAGSEVISRGG
PRKADGQRQALDYVELSPLTQASPQRARTPARTPDRLAKQEELERDLAQRSEERRKWF
EATDSRTPEVPAGEGPRRGLGAPLTEDQQNRLSEEIEKKWQELEKLPLRENKRVPLTA
LLNQSRGERRGPPSDGHEALEKEVQALRAQLEAWRLQGEAPQSALRSQEDGHIPPGYI
SQEACERSLAEMESSHQQVMEELQRHHERELQRLQQEKEWLLAEETAATASAIEAMKK
AYQEELSRELSKTRSLQQGPDGLRKQHQSDVEALKRELQVLSEQYSQKCLEIGALMRQ
AEEREHTLRRCQQEGQELLRHNQELHGRLSEEIDQLRGFIASQGMGNGCGRSNERSSC
ELEVLLRVKENELQYLKKEVQCLRDELQMMQKDKRFTSGKYQDVYVELSHIKTRSERE
IEQLKEHLRLAMAALQEKESMRNSLAE"
BASE COUNT 521 a 687 c 695 g 345 t
ORIGIN
1 gggcggcggc ggcggcggcg gcggggttcc cgcgccgcgg agcccggccc gagagccgcg
61 tccacgttcc tgcctcctgc tcccgccgcc ctggggcgcc gccatgacgc ccgatctgct
121 caacttcaag aagggatgga tgtcgatctt ggacgagcct ggagagcctc cctccccctc
181 gctcaccacc acctctactt cgcagtggaa gaaacattgg tttgtgctga cagattcaag
241 tctcaaatat tacagagact ccactgctga ggaggcagat gagctggatg gtgagatcga
301 cctgcgttcc tgcacggatg tcactgagta cgcggtgcag cgcaactatg gcttccagat
361 ccacaccaag gatgctgtct ataccttgtc ggccatgacc tcaggcatcc ggcggaactg
421 gatcgaggct ctgagaaaga ccgtacgtcc aacttcagcc ccagatgtca ccaagctctc
481 ggactctaac aaggagaacg cgctgcacag ctacagcacc cagaagggcc ccctgaaggc
541 aggggagcag cgggcgggct ctgaggtcat cagccggggt ggccctcgga aggcggacgg
601 gcagcgtcag gccttggact acgtggagct ctcgccgctg acccaggctt ccccgcagcg
661 ggcccgcacc ccagcccgca ctcctgaccg cctggccaag caggaggagc tggagcggga
721 cctggcccag cgctccgagg agcggcgcaa gtggtttgag gccacagaca gcaggacccc
781 agaggtgcct gctggtgagg ggccgcgccg gggcctgggt gcccccctga ctgaggacca
841 gcaaaaccgg cttagtgagg agatcgagaa gaagtggcag gagctggaga agctgcccct
901 gcgggagaat aagcgggtgc ccctcactgc cctgctcaac caaagccgcg gagagcgccg
961 agggccccca agtgacggcc acgaggcact ggagaaggag gttcaggctc ttcgggccca
1021 gctggaggcg tggcgtctcc aaggggaggc tcctcagagt gcactgagat cccaggagga
1081 tggccacatc cccccgggct acatctcaca ggaggcatgt gagcgcagcc tggcagagat
1141 ggagtcctcg caccagcagg tgatggagga gctgcagcgg caccacgagc gggagctgca
1201 gcgcctgcag caggagaagg agtggctcct ggctgaggag acggcagcca cggcctcagc
1261 cattgaagcc atgaagaagg cctatcagga agagctgagc cgagagctga gcaaaacacg
1321 gagtctccag cagggcccgg atggcctccg gaagcagcac cagtcagatg tggaggcact
1381 gaagcgagag ctgcaggtgc tatcggagca gtactcgcag aagtgcctgg agattggggc
1441 actcatgcgg caggctgagg agcgcgagca cacgctgcgc cgctgccagc aggagggcca
1501 ggagctgctg cgccacaacc aggagctgca tggccgcctg tcagaggaga tagaccagct
1561 gcgcggcttc attgcctcgc agggcatggg caatggctgc gggcgcagca acgagcggag
1621 ttcctgcgag ctagaggtgc tgcttcgcgt aaaagaaaac gaactccagt acctaaagaa
1681 ggaggtgcag tgcctccggg acgagctcca gatgatgcag aaggacaagc gcttcacctc
1741 gggaaagtac caggacgtct atgtggagct gagccacatc aagacacggt ctgagcggga
1801 gatcgagcag ctgaaggagc acctgcgtct tgccatggcc gccctccagg agaaggagtc
1861 gatgcgcaac agcctggctg agtagaggtc ccgcccagct gcagaccctc caggctggag
1921 gaccagccgc cctccttccc tcctggatgg aagtaaaaag ccaagctttc tccccaccct
1981 ctgtgggcca cacgtgcact tgcacccacc acacacacac acacacacac acacacacag
2041 acacacagac acatacgcac acacgtgcac acatgtacac acggatacac acacacacac
2101 acacacacac actgcatatc tgagcgcgcc cctcgcactg ggtctcacct tgcaccttct
2161 tcaggatttt atatgtgaag agatttttat atagattttt ttcctttttt tccaaaacac
2221 tttatacttt aaaaaaaaaa aaaaaaaa
//