LOCUS BC003583 2833 bp mRNA linear HUM 11-SEP-2007 DEFINITION Homo sapiens fat mass and obesity associated, mRNA (cDNA clone IMAGE:3353414), complete cds. ACCESSION BC003583 VERSION BC003583.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2833) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2833) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (20-FEB-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 6 Row: n Column: 1 This clone was selected for full length sequencing because it passed the following selection criteria: Hexamer frequency ORF analysis This clone has the following problem: The cds is short compared to the longest cds in the locus. FEATURES Location/Qualifiers source 1..2833 /db_xref="H-InvDB:HIT000050427" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:3353414" /tissue_type="Eye, retinoblastoma" /clone_lib="NIH_MGC_16" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..2833 /gene="FTO" /db_xref="GeneID:79068" /db_xref="HGNC:HGNC:24678" /db_xref="MIM:610966" CDS 69..251 /gene="FTO" /codon_start=1 /product="FTO protein" /protein_id="AAH03583.1" /db_xref="GeneID:79068" /db_xref="HGNC:HGNC:24678" /db_xref="MIM:610966" /translation="MACQGREECWCQSRIARTLPADQKPECRPYWEKDDASMPLPFDL TDIVSELRGQLLEAKP" BASE COUNT 787 a 671 c 582 g 793 t ORIGIN 1 gaacaaagga atgaaatctt gactgccatc cttgcctcgc tcactgcacg ccagaacctg 61 aggagagaat ggcatgccag ggcagagagg agtgttggtg ccagtcacga attgcccgaa 121 cattacctgc tgatcagaag ccagaatgtc ggccatactg ggaaaaggat gatgcttcga 181 tgcctctgcc gtttgacctc acagacatcg tttcagaact cagaggtcag cttctggaag 241 caaaacccta gaaggagcac aagtctcagg cggaggagaa aaagagatcg gcttttctcc 301 tccaacgttg tcatgggctt aagcaagagc agtggagact tctcttggcc cctagattgt 361 agcacccggg tcccaatcca aaacagctag gaaatggtgc ccatgaagtt ttaaatgttt 421 taaaatgacc ctgtgttata gtctgatttg gtgttaaaca ggaccttctt cccccaaaat 481 tgttcagatt ataaaatgtg agccattcag cccccaaggt ccagggcagg cgacaggaac 541 gagcccagcg tgtgacaaag cctaacctac tttcctcttt cccaagcttt ttcagagact 601 ctggagtgga cccagccctc tggggaaaga cagaacttag agacatccca gttactcacc 661 acacccatag tgctgtccaa tatggtagcc actagctagc tgtggctact tcaatttaaa 721 ttcagtttta attttaatta aaaatgcagc tcttcagtcg ccctggccac atttcaagtg 781 cttaacagcc tcatgtggct agtgactgct gtattggacg gtacagatat ggaacatttt 841 catcatcgaa gaaagtccta ttggacaaca cttctataaa aagtttgaga gcaggaattc 901 tcatttccat tcgtctgtag cttctatccc caaaggcaaa gaaactaaaa gagaaatgac 961 tcattgaaga ttggcctctt tcctttctct aagacaaacc taagtaaaag cctgagcttt 1021 gagtcctatg ctcagcacac gggaaggaga tgttaataat taaaataaag ttgatatcct 1081 gtctttaggg agttcccttg atctcttgaa agagacacag ccccatttac attatttcgt 1141 ggatttcacc agcatagtat agtttttttc tgtaagtccc tcattcttat gtaataacag 1201 gtggaactga ggtttgaaga acctcagtgg cccatcctga tgacattgga gactcaaaga 1261 gacaagagag agtagggttt aaaacctgag ctttaagact cccactagct tcgtgtcctt 1321 tggcatgtta acgtgcctca gtttcctcat ctgtataatg gggatatatg aaaggcacca 1381 gtcctaaggt gaacattaag tgagatgatt ctagttacag acttagaaca atttccagca 1441 catagttaaa tatccaggaa attctggtac tgttatgtgt gggtgagctg acctggatgt 1501 agatgttttc ctctctcttg ctgacccctc cgccagtttt gtcttgtgat gccattaaca 1561 catctctccc tttctgacct ggctcctgcc cattggtgtc ccaagaaatc gtgagaatag 1621 ttagcccccc tctccccagc ctgttgcttt ctcgtgtagt tgttcacagt agttgagaag 1681 ttgaagagct tttgcctatt gaaggtgcac tgagaataaa ctctttcctg ccaccagaat 1741 tgcagtggtt cacggcctgc actcattccc atgaatgcag ttaatagcca cagaaatgtc 1801 acattaagca aagcagccag ggtctcatcg tgttgagact cgagtctctc agaccttgga 1861 ttcattccct ggtgtctttg agcctcagtt tcctcattgg taaaagagaa gtgaagcagt 1921 gtctcacagg gtcattacag agattaaatg aaataaatga aataacatag accaggaggg 1981 cgtggtgttt aaaagtcaca gatggggcac cctcgggcca tccagcccag tgttttcttt 2041 agcccctatg atgttcattt tttgttatat cccattaggt gcccatattt aaaaattggg 2101 agatttcaca taaaattaaa aggtctgcat tttctttttt cttttctttt tttttttttt 2161 gagacacagt ctcactctgt caccaggcta gagtgcagtg gcacgatctc agctcactgc 2221 aacctctgcc tcccaggttc aagtaattct cctgcctcag cctcccaagt agctgggact 2281 acaggcacgt gccaccacgc ccagctaatt tttgtatttt tagcagagat ggggtttcac 2341 cacattggcc aggatgatct cgatctcaac ctcgtgatcc acccacctcg gtctcccaaa 2401 gcgctgggat tacaggcgtg agccaccgcg ccaagccaag gtctgcattt ttctttagaa 2461 ctcagaacac ccaatagtcc taggccccca tcctcgcatg gcagcaagct aaataagcat 2521 cttcccactg cgagttgggg catgacccag cctatggttt gccatactcc ctctttttct 2581 ccgttttttc attaattgtg aacctgacct gcatcaccct ttcatgtcag tgctctccaa 2641 acctgcttgc ttgcacccct ctagtcgaaa tattttgtgc ttaccccaat atatgtgtgt 2701 gactattgaa ctctattcgt agactgcttg tactaatgtc atttgcatca taaaatattc 2761 atatccaata aacatattaa aaagataaga taaaaaaaaa aaaaaaaaaa aaaaaaaaaa 2821 aaaaaaaaaa aaa //