LOCUS BC003578 2549 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens leucine rich repeat and fibronectin type III domain containing 3, mRNA (cDNA clone MGC:2656 IMAGE:3537259), complete cds. ACCESSION BC003578 VERSION BC003578.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2549) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2549) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (20-FEB-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 8 Row: f Column: 13 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 13375645. FEATURES Location/Qualifiers source 1..2549 /db_xref="H-InvDB:HIT000031615" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:2656 IMAGE:3537259" /tissue_type="Lung, small cell carcinoma" /clone_lib="NIH_MGC_7" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..2549 /gene="LRFN3" /gene_synonym="MGC2656" /gene_synonym="SALM4" /db_xref="GeneID:79414" /db_xref="HGNC:HGNC:28370" CDS 453..2339 /gene="LRFN3" /gene_synonym="MGC2656" /gene_synonym="SALM4" /codon_start=1 /product="leucine rich repeat and fibronectin type III domain containing 3" /protein_id="AAH03578.1" /db_xref="GeneID:79414" /db_xref="HGNC:HGNC:28370" /translation="MAILPLLLCLLPLAPASSPPQSATPSPCPRRCRCQTQSLPLSVL CPGAGLLFVPPSLDRRAAELRLADNFIASVRRRDLANMTGLLHLSLSRNTIRHVAAGA FADLRALRALHLDGNRLTSLGEGQLRGLVNLRHLILSNNQLAALAAGALDDCAETLED LDLSYNNLEQLPWEALGRLGNVNTLGLDHNLLASVPAGAFSRLHKLARLDMTSNRLTT IPPDPLFSRLPLLARPRGSPASALVLAFGGNPLHCNCELVWLRRLAREDDLEACASPP ALGGRYFWAVGEEEFVCEPPVVTHRSPPLAVPAGRPAALRCRAVGDPEPRVRWVSPQG RLLGNSSRARAFPNGTLELLVTEPGDGGIFTCIAANAAGEATAAVELTVGPPPPPQLA NSTSCDPPRDGDPDALTPPSAASASAKVADTGPPTDRGVQVTEHGATAALVQWPDQRP IPGIRMYQIQYNSSADDILVYRMIPAESRSFLLTDLASGRTYDLCVLAVYEDSATGLT ATRPVGCARFSTEPALRPCGAPHAPFLGGTMIIALGGVIVASVLVFIFVLLMRYKVHG GQPPGKAKIPAPVSSVCSQTNGALGPTPTPAPPAPEPAALRAHTVVQLDCEPWGPGHE PVGP" BASE COUNT 440 a 935 c 738 g 436 t ORIGIN 1 ccaaggggcc tgaacccgag tttgggcctg aagtccttgc tgcagacctg agtgcttaaa 61 tctggggctt gagacctccc aatcttgact cagcacccca atatctgaat gcagaacccc 121 gggatcggat ctcagactct aaaccccacc gtttggctgc ttagcatccc aagactggac 181 ctgggagacc ctgaccctga acaacccaaa ctggacccgt aaaactggac cctagaggcc 241 caatatttag gggtctggaa ccccgagtat taaggtctgg agactccgtt gccacagatt 301 tgagccgagt caggacacag tccctctaca gaagccttgg ggacaggaaa agcatgacca 361 gatgctccct ccagagccct gacctctgac tcccctggag ctaggactct gctccctggg 421 gctgcttcta gctcaggaca cccctgcccg cgatggccat cctcccgttg ctcctgtgcc 481 tgctgccgct ggcccctgcc tcatccccac cccagtcagc cacacccagc ccatgtcccc 541 gccgctgccg ctgccagaca cagtcgctgc ccctaagcgt gctgtgccca ggggcaggcc 601 tcctgttcgt gccaccctcg ctggaccgcc gggcagccga gctgcggctg gcagacaact 661 tcatcgcctc cgtgcgccgc cgcgacctgg ccaacatgac aggcctgctg catctgagcc 721 tgtcgcggaa caccatccgc cacgtggctg ccggcgcctt cgccgacctg cgggccctgc 781 gtgccctgca cctggatggc aaccggctga cctcactggg cgagggccag ctgcgcggcc 841 tggtcaactt gcgccacctc atcctcagca acaaccagct ggcagcgctg gcggccggcg 901 ccctggatga ttgtgccgag acactggagg acctcgacct ctcctacaac aacctcgagc 961 agctgccctg ggaggccctg ggccgcctgg gcaacgtcaa cacgttgggc ctcgaccaca 1021 acctgctggc ttctgtgccc gccggcgctt tttcccgcct gcacaagctg gcccggctgg 1081 acatgacctc caaccgcctg accacaatcc cacccgaccc actcttctcc cgcctgcccc 1141 tgctcgccag gccccggggc tcgcccgcct ctgccctggt gctggccttt ggcgggaacc 1201 ccctgcactg caactgcgag ctggtgtggc tgcgtcgcct ggcgcgggag gacgacctcg 1261 aggcctgcgc gtccccacct gctctgggcg gccgctactt ctgggcggtg ggcgaggagg 1321 agtttgtctg cgagccgccc gtggtgactc accgctcacc acctctggct gtgcccgcag 1381 gtcggccggc tgccctgcgc tgccgggcag tgggggaccc agagccccgt gtgcgttggg 1441 tgtcacccca gggccggctg ctaggcaact caagccgtgc ccgcgccttc cccaatggga 1501 cgctggagct gctggtcacc gagccgggtg atggtggcat cttcacctgc attgcggcca 1561 atgcagctgg cgaggccaca gctgctgtgg agctgactgt gggtccccca ccacctcctc 1621 agctagccaa cagcaccagc tgtgaccccc cgcgggacgg ggatcctgat gctctcaccc 1681 caccctccgc tgcctctgct tctgccaagg tggccgacac tgggccccct accgaccgtg 1741 gcgtccaggt gactgagcac ggggccacag ctgctcttgt ccagtggccg gatcagcggc 1801 ctatcccggg catccgcatg taccagatcc agtacaacag ctcggctgat gacatcctcg 1861 tctacaggat gatcccggcg gagagccgct cgttcctgct gacggacctg gcgtcaggcc 1921 ggacctacga tctgtgcgtg ctcgccgtgt atgaggacag cgccacgggg ctcacggcca 1981 cgcggcctgt gggctgcgcc cgcttctcca ccgaacctgc gctgcggcca tgcggggcgc 2041 cgcacgctcc cttcctgggc ggcacgatga tcatcgcgct gggcggcgtc atcgtagcct 2101 cggtactggt cttcatcttc gtgctgctaa tgcgctacaa ggtgcacggc ggccagcccc 2161 ccggcaaggc caagattccc gcgcctgtta gcagcgtttg ctcccagacc aacggcgccc 2221 tgggccccac gcccacgccc gccccgcccg ccccggagcc cgcggcgctc agggcccaca 2281 ccgtggtcca gctggactgc gagccctggg ggcccggcca cgaacctgtg ggaccctagc 2341 caggcgcccc cccctctaag ggtcctctgg ccccacggac agcaggaccc ggacaccctg 2401 tgggacctgg cctcaaactc accaaatcgc tcatggtttt taaaactctg atggggaggg 2461 tgtcggggac accggggcaa aacaagaaag tcctattttt ccaagcttgg gcgaaaaaaa 2521 aaaaaaaaaa aaaaaaaaaa aaaaaaaaa //