LOCUS BC003553 2587 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens TRAF-type zinc finger domain containing 1, mRNA (cDNA
clone MGC:1295 IMAGE:3547039), complete cds.
ACCESSION BC003553
VERSION BC003553.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2587)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2587)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC003553.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 8 Row: n Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 5729827.
FEATURES Location/Qualifiers
source 1..2587
/db_xref="H-InvDB:HIT000031591"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1295 IMAGE:3547039"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2587
/gene="TRAFD1"
/gene_synonym="FLN29"
/db_xref="GeneID:10906"
/db_xref="HGNC:HGNC:24808"
CDS 13..1761
/gene="TRAFD1"
/gene_synonym="FLN29"
/codon_start=1
/product="TRAF-type zinc finger domain containing 1"
/protein_id="AAH03553.1"
/db_xref="GeneID:10906"
/db_xref="HGNC:HGNC:24808"
/translation="MAEFLDDQETRLCDNCKKEIPVFNFTIHEIHCQRNIGMCPTCKE
PFPKSDMETHMAAEHCQVTCKCNKKLEKRLLKKHEETECPLRLAVCQHCDLELSILKL
KEHEDYCGARTELCGNCGRNVLVKDLKTHPEVCGREGEEKRNEVAIPPNAYDESWGQD
GIWIASQLLRQIEALDPPMRLPRRPLRAFESDVFHNRTTNQRNITAQVSIQNNLFEEQ
ERQERNRGQQPPKEGGEESANLDFMLALSLQNEGQASSVAEQDFWRAVCEADQSHGGP
RSLSDIKGAADEIMLPCEFCEELYPEELLIDHQTSCNPSRALPSLNTGSSSPRGVEEP
DVIFQNFLQQAASNQLDSLMGLSNSHPVEESIIIPCEFCGVQLEEEVLFHHQDQCDQR
PATATNHVTEGIPRLDSQPQETSPELPRRRVRHQGDLSSGYLDDTKQETANGPTSCLP
PSRPINNMTATYNQLSRSTSGPRPGCQPSSPCVPKLSNSDSQDIQGRNRDSQNGAIAP
GHVSVIRPPQNLYPENIVPSFSPGPSGRYGASGRSEGGRNSRVTPAAANYRSRTAKAK
PSKQQGAGDAEEEEEE"
BASE COUNT 644 a 624 c 698 g 621 t
ORIGIN
1 gaagagctaa agatggctga atttctagat gaccaggaaa ctcgactgtg tgacaactgc
61 aaaaaagaaa ttcctgtgtt taactttacc atccatgaga tccactgtca aaggaacatt
121 ggtatgtgtc ctacctgtaa ggaaccattt cccaaatctg acatggagac tcacatggct
181 gcagaacact gtcaggtgac ctgcaaatgt aacaagaagt tggagaagag gctgttaaag
241 aagcatgagg agactgagtg ccctttgcgg cttgctgtct gccagcactg tgatttagaa
301 ctttccattc tcaaactgaa ggaacatgaa gattattgtg gtgcccggac ggaactatgt
361 ggcaactgtg gtcgcaatgt ccttgtgaaa gatctgaaga ctcaccctga agtttgtggg
421 agagaggggg aggaaaagag aaatgaggtt gccatacctc ctaatgcata tgatgaatct
481 tggggtcagg atggaatctg gattgcatcc caactcctca gacaaattga ggctctggac
541 ccacccatga ggctgccgcg aaggcccctg agagcctttg aatcagatgt tttccacaat
601 agaactacca accaaaggaa cattacagcc caggtttcaa ttcagaataa tctgtttgaa
661 gaacaagaga ggcaggaaag gaatagaggc caacagcccc ccaaagaggg tggtgaagag
721 agtgcaaact tggacttcat gttggcccta agtctgcaaa atgaaggcca agcctccagt
781 gtggcagagc aggacttctg gagggccgta tgtgaggccg accagtctca tggcggtccc
841 aggtctctca gtgacataaa gggtgcagct gacgagatca tgttgccttg tgaattttgt
901 gaggagctct acccagagga actgctgatt gaccatcaga caagctgtaa cccttcacgt
961 gccttacctt cactcaatac tggcagctct tcccccagag gggtggagga acctgatgtc
1021 atcttccaga acttcttgca acaggctgca agtaaccagt tagactcttt gatgggcctg
1081 agcaattcac accctgtgga ggagagcatc attatcccat gtgaattctg tggggtacag
1141 ctggaagagg aggtgctgtt ccatcaccag gaccagtgtg accaacgccc agccactgca
1201 accaaccatg tgacagaggg gattcctaga ctggattccc agcctcaaga gacctcacca
1261 gagctgccca ggaggcgtgt cagacaccag ggagacctgt cttctggtta cctggatgat
1321 actaagcagg aaacagctaa tgggcccacc tcctgtctgc ctcccagccg acccattaac
1381 aatatgacag ctacctataa ccagctatcg agatcaacat caggccccag acctgggtgc
1441 cagcccagct ctccttgtgt gccgaagctc agcaactcag acagccagga catccagggg
1501 cggaatcgag acagccagaa tggggccata gcccctgggc acgtttcagt gattcgccct
1561 cctcaaaatc tctacccaga aaacattgtg ccctctttct cccctgggcc ttcagggaga
1621 tacggagcta gtggtaggag tgaaggtggc aggaattccc gggtcacccc tgcagctgcc
1681 aactaccgca gcagaactgc aaaggcaaag ccttccaagc aacagggagc tggggatgca
1741 gaagaggaag aggaggagta atggtgtctc cagagacttt acatcggttc ctgtcttctg
1801 tgcacagcag cacttgccgc tgtgcaggcc cacctctttg gctctttggg tgggagagtt
1861 tttccagatt ttagattttt ctaggttatg gccattttgt gtcttttgag gttgtgctgt
1921 gggggtttgg gtttgaggga agggagcagg gtggcggttg aggaacgctt cagccttagc
1981 tgctaccttt cggcagcagt gaaatacaag ctgcagcctc ggctgccagg gctccctttt
2041 gacttattgt cgccactgcc ccttggtgct gtgtggtccc agtggaagga ggggaagatt
2101 ttggaaacct ggtagccacc agtaaggtga ttctctgccc tgttggggcc taaatttggg
2161 ggcttttggg caacctctcc gtgtactgcg tctgtccaca ctcgattggg ccccaggtgt
2221 gtatgaggcg ctctggtaag gtgctcaggc cagttgcaat gtctgtcagt aacgaggctt
2281 ttgatgtgtt gagctggagg tgagtggacc gggggctgtg ttttaagctg cttccttggc
2341 atttggcatc actgccttct gttcccgggg gagcatggat cttttgtcct cactgctttc
2401 taatggggag ggctgagggc tccctgtccc cacagcaggt atgttgggct ctgccccagc
2461 cccacacttg ctctgaaaac caagtgtcag agccccttcc ccttgttttt attttactgt
2521 tataataatt attaacttcc ttgtaataga aataaagttt gtacttggaa aaaaaaaaaa
2581 aaaaaaa
//