LOCUS BC003505 1583 bp mRNA linear HUM 11-AUG-2006 DEFINITION Homo sapiens high-mobility group 20B, mRNA (cDNA clone MGC:10419 IMAGE:3609369), complete cds. ACCESSION BC003505 VERSION BC003505.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1583) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1583) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (20-FEB-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 13 Row: m Column: 15 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 5454079. FEATURES Location/Qualifiers source 1..1583 /db_xref="H-InvDB:HIT000031563" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:10419 IMAGE:3609369" /tissue_type="Uterus, endometrium adenocarcinoma" /clone_lib="NIH_MGC_44" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1583 /gene="HMG20B" /gene_synonym="BRAF25" /gene_synonym="BRAF35" /gene_synonym="HMGX2" /gene_synonym="PP7706" /gene_synonym="pp8857" /gene_synonym="SMARCE1r" /gene_synonym="SOXL" /db_xref="GeneID:10362" /db_xref="HGNC:HGNC:5002" /db_xref="MIM:605535" CDS 57..1010 /gene="HMG20B" /gene_synonym="BRAF25" /gene_synonym="BRAF35" /gene_synonym="HMGX2" /gene_synonym="PP7706" /gene_synonym="pp8857" /gene_synonym="SMARCE1r" /gene_synonym="SOXL" /codon_start=1 /product="high-mobility group 20B" /protein_id="AAH03505.2" /db_xref="GeneID:10362" /db_xref="HGNC:HGNC:5002" /db_xref="MIM:605535" /translation="MSHGPKQPGAAAAPAGGKAPGQHGGFVVTVKQERGEGPRAGEKG SHEEEPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITK MLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEAYKMCTEKIQEKKIKKEDS SSGLMNTLLNGHKGGDCDGFSTFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNA VLQRHTQSMSSARERLEQELALEERRTLALQQQLQAVRQALTASFASLPVPGTGETPT LGTLDFYMARLHGAIERDPAQHEKLIVRIKEILAQVASEHL" BASE COUNT 354 a 492 c 508 g 229 t ORIGIN 1 gtcgcgcagt cgggaggtcc gggaaagttt ctttggaggt ccggcccgga gcggccatgt 61 cccacggccc caagcagccc ggcgcggccg ccgcgccggc gggcggcaag gctccgggcc 121 agcatggggg cttcgtggtg actgtcaagc aagagcgcgg cgagggtcca cgcgcgggcg 181 agaaggggtc ccacgaggag gagccggtga agaaacgcgg ctggcccaag ggcaagaagc 241 ggaagaagat tctgccgaat gggcccaagg caccggtcac gggctacgtg cgcttcctga 301 acgagcggcg cgagcagatc cgcacgcgcc acccggatct gccctttccc gagatcacca 361 agatgctggg cgccgagtgg agcaagctgc agccaacgga aaagcagcgg tacctggatg 421 aggccgagag agagaagcag cagtacatga aggagctgcg ggcgtaccag cagtctgaag 481 cctataagat gtgcacggag aagatccagg agaagaagat caagaaagaa gactcgagct 541 ctgggctcat gaacactctc ctgaatggac acaagggtgg ggactgcgat ggcttctcca 601 ccttcgatgt tcccatcttc actgaagagt tcttggacca aaacaaagcg cgtgaggcgg 661 agcttcggcg cttgcggaag atgaatgtgg ccttcgagga gcagaacgcg gtactgcaga 721 ggcacacgca gagcatgagc agcgcgcgcg agcgtctgga gcaggagctg gcgctggagg 781 agcggaggac gctggcgctg cagcagcagc tccaggccgt gcgccaggcg ctcaccgcca 841 gcttcgcctc actgccggtg ccgggcacgg gcgaaacgcc cacgctgggc actctggact 901 tctacatggc ccggcttcac ggagccatcg agcgcgaccc cgcccagcac gagaagctca 961 tcgtccgcat caaggaaatc ctggcccagg tcgccagcga gcacctgtga ggagtgggcg 1021 ggcccacgat gcagaggaga agctgtgggc gcggccctgc cacaccccac cccgtggacg 1081 agaggctggg ggtccaccct ttggggcctg gtcccatcct gcaccttggg ggctccagcc 1141 cccctaaaat taaatttctg cagcatccct ttagctttca atctccccag ccccctgaac 1201 ccggaaaaag cactcgctgc gcgatacacc cagaagaacc tcacagccga gggtgcccct 1261 cctcggagga cagccacgcg ctacactggc tctccgggcc acccccagga cacagggcag 1321 acgaaaccca cccccagcac acggcaggac cccccaaatt actcactacg gggggctgtg 1381 ccataggcca cacaggaagc tgccttgtgg ggacttacct ggggtgtccc ccgcatgcct 1441 gtaccccaga tgggtggggg ccggctttgc ccatcctgct ctcctccagc cgagggaccc 1501 tggtgggggt ggctccttct cactgctgga tccggacttt ttaaataaaa acaagtaaaa 1561 tttgaaaaaa aaaaaaaaaa aaa //