LOCUS       BC003505                1583 bp    mRNA    linear   HUM 11-AUG-2006
DEFINITION  Homo sapiens high-mobility group 20B, mRNA (cDNA clone MGC:10419
            IMAGE:3609369), complete cds.
ACCESSION   BC003505
VERSION     BC003505.1
KEYWORDS    MGC.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1583)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 1583)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2001) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: ATCC
            cDNA Library Preparation: Rubin Laboratory
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Genome Sequence Centre,
            BC Cancer Agency, Vancouver, BC, Canada
            info@bcgsc.bc.ca
            Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
            Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
            Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
            Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
            Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
            Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
            Kim MacDonald,  Mike R. Mayo, Josh Moran, Diana Palmquist, JR
            Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
            Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAL Plate: 13 Row: m Column: 15
            This clone was selected for full length sequencing because it
            passed the following selection criteria: matched mRNA gi: 5454079.
FEATURES             Location/Qualifiers
     source          1..1583
                     /db_xref="H-InvDB:HIT000031563"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="MGC:10419 IMAGE:3609369"
                     /tissue_type="Uterus, endometrium adenocarcinoma"
                     /clone_lib="NIH_MGC_44"
                     /lab_host="DH10B-R"
                     /note="Vector: pOTB7"
     gene            1..1583
                     /gene="HMG20B"
                     /gene_synonym="BRAF25"
                     /gene_synonym="BRAF35"
                     /gene_synonym="HMGX2"
                     /gene_synonym="PP7706"
                     /gene_synonym="pp8857"
                     /gene_synonym="SMARCE1r"
                     /gene_synonym="SOXL"
                     /db_xref="GeneID:10362"
                     /db_xref="HGNC:HGNC:5002"
                     /db_xref="MIM:605535"
     CDS             57..1010
                     /gene="HMG20B"
                     /gene_synonym="BRAF25"
                     /gene_synonym="BRAF35"
                     /gene_synonym="HMGX2"
                     /gene_synonym="PP7706"
                     /gene_synonym="pp8857"
                     /gene_synonym="SMARCE1r"
                     /gene_synonym="SOXL"
                     /codon_start=1
                     /product="high-mobility group 20B"
                     /protein_id="AAH03505.2"
                     /db_xref="GeneID:10362"
                     /db_xref="HGNC:HGNC:5002"
                     /db_xref="MIM:605535"
                     /translation="MSHGPKQPGAAAAPAGGKAPGQHGGFVVTVKQERGEGPRAGEKG
                     SHEEEPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITK
                     MLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEAYKMCTEKIQEKKIKKEDS
                     SSGLMNTLLNGHKGGDCDGFSTFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNA
                     VLQRHTQSMSSARERLEQELALEERRTLALQQQLQAVRQALTASFASLPVPGTGETPT
                     LGTLDFYMARLHGAIERDPAQHEKLIVRIKEILAQVASEHL"
BASE COUNT          354 a          492 c          508 g          229 t
ORIGIN      
        1 gtcgcgcagt cgggaggtcc gggaaagttt ctttggaggt ccggcccgga gcggccatgt
       61 cccacggccc caagcagccc ggcgcggccg ccgcgccggc gggcggcaag gctccgggcc
      121 agcatggggg cttcgtggtg actgtcaagc aagagcgcgg cgagggtcca cgcgcgggcg
      181 agaaggggtc ccacgaggag gagccggtga agaaacgcgg ctggcccaag ggcaagaagc
      241 ggaagaagat tctgccgaat gggcccaagg caccggtcac gggctacgtg cgcttcctga
      301 acgagcggcg cgagcagatc cgcacgcgcc acccggatct gccctttccc gagatcacca
      361 agatgctggg cgccgagtgg agcaagctgc agccaacgga aaagcagcgg tacctggatg
      421 aggccgagag agagaagcag cagtacatga aggagctgcg ggcgtaccag cagtctgaag
      481 cctataagat gtgcacggag aagatccagg agaagaagat caagaaagaa gactcgagct
      541 ctgggctcat gaacactctc ctgaatggac acaagggtgg ggactgcgat ggcttctcca
      601 ccttcgatgt tcccatcttc actgaagagt tcttggacca aaacaaagcg cgtgaggcgg
      661 agcttcggcg cttgcggaag atgaatgtgg ccttcgagga gcagaacgcg gtactgcaga
      721 ggcacacgca gagcatgagc agcgcgcgcg agcgtctgga gcaggagctg gcgctggagg
      781 agcggaggac gctggcgctg cagcagcagc tccaggccgt gcgccaggcg ctcaccgcca
      841 gcttcgcctc actgccggtg ccgggcacgg gcgaaacgcc cacgctgggc actctggact
      901 tctacatggc ccggcttcac ggagccatcg agcgcgaccc cgcccagcac gagaagctca
      961 tcgtccgcat caaggaaatc ctggcccagg tcgccagcga gcacctgtga ggagtgggcg
     1021 ggcccacgat gcagaggaga agctgtgggc gcggccctgc cacaccccac cccgtggacg
     1081 agaggctggg ggtccaccct ttggggcctg gtcccatcct gcaccttggg ggctccagcc
     1141 cccctaaaat taaatttctg cagcatccct ttagctttca atctccccag ccccctgaac
     1201 ccggaaaaag cactcgctgc gcgatacacc cagaagaacc tcacagccga gggtgcccct
     1261 cctcggagga cagccacgcg ctacactggc tctccgggcc acccccagga cacagggcag
     1321 acgaaaccca cccccagcac acggcaggac cccccaaatt actcactacg gggggctgtg
     1381 ccataggcca cacaggaagc tgccttgtgg ggacttacct ggggtgtccc ccgcatgcct
     1441 gtaccccaga tgggtggggg ccggctttgc ccatcctgct ctcctccagc cgagggaccc
     1501 tggtgggggt ggctccttct cactgctgga tccggacttt ttaaataaaa acaagtaaaa
     1561 tttgaaaaaa aaaaaaaaaa aaa
//