LOCUS BC003192 4410 bp mRNA linear HUM 18-JAN-2005
DEFINITION Homo sapiens transmembrane protein 39A, mRNA (cDNA clone
IMAGE:3501645), complete cds.
ACCESSION BC003192
VERSION BC003192.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4410)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4410)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (13-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
Schein, Asim Siddiqui, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 6 Row: p Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 8922755
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..4410
/db_xref="H-InvDB:HIT000086225"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3501645"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..4410
/gene="TMEM39A"
/gene_synonym="FLJ10902"
/db_xref="GeneID:55254"
CDS 337..777
/gene="TMEM39A"
/gene_synonym="FLJ10902"
/codon_start=1
/product="TMEM39A protein"
/protein_id="AAH03192.1"
/db_xref="GeneID:55254"
/translation="MPGGRRGPSRQQLSRSALPSLQTLVGGGCGNGTGLRNRNGSAIG
LPVPPITALITPGPVRHCQIPDLPVDGSLLFEFLFFIYLLVALFIQYINIYKTVWWYP
YNHPASCTSLNFHLIDYHLAAFITVMLARRLVWALISEVCVCKL"
BASE COUNT 1200 a 864 c 984 g 1362 t
ORIGIN
1 ggctagggat gggtgctgaa gtatcaggct ctggctctag ctttagctct ggcactggaa
61 ctgcgtcgga gtctgggtct gagtctggca gcccgaagcc tggacacctt ttcttgattc
121 tctaggcggg ggctgcctgc gtccaagcag ctggtttgca gcgttccaac gctgggaggg
181 agttccctta cctggggtcc agtctgtaaa gttgtcgccg ctttctaggg accccgcccc
241 accggctggg actcttccat gcagttgaaa ctggttgaca accattaacc tgggttgcaa
301 ctacaggtgg cactggaagc agactggttc ctggacatgc ccggtggaag gaggggccct
361 agtcggcaac agctaagccg ttcagcttta ccttctttgc agactttggt tggtggaggc
421 tgtggcaatg gaacaggctt gagaaacagg aatggtagtg ctattggcct tccagtccca
481 cctatcacag ccttaatcac cccaggtcct gttcgtcatt gccaaattcc tgacttgcct
541 gtggatggga gcctactctt tgaattcctt tttttcatct acctgttggt tgctcttttc
601 attcagtaca tcaacattta taaaacagtg tggtggtatc cttacaatca tcctgcttct
661 tgtacatcac tgaattttca tctcattgat tatcatctgg cagcattcat cacagtgatg
721 cttgcgagga ggcttgtatg ggctctcatc tcagaggtct gtgtgtgtaa gctctgattt
781 tcaggaaccc tatttctgga agcagagtaa ctggaaatac taagtcaaga tctgaaaacc
841 atttgaagtt aaccaaaaag cacaggctac taaggcaggt gcagcatcaa tgattcacta
901 catggttctg atatcagctc gcttggtact actcactttg tgtggatggg tactttgttg
961 gaccctcgtc aatctctttc gaagccattc agtcctcaat ctccttttcc ttggctaccc
1021 gtttggtgtt tatgttcctc tttgctgttt tcatcaagat agtagagcac atcttcttct
1081 cacagactac aactatgtgg ttcagcacga ggcagtagag gaaagtgcct cgactgtggg
1141 aggcttggcc aaatccaaag actttctctc cttgttgctg gagtcgctaa aagaacagtt
1201 taataatgcc acacccatcc ccacccacag ttgtccccta tctccagacc tcattcgcaa
1261 tgaagtagaa tgtctgaaag cagatttcaa ccacagaatc aaggaggttc tcttcaactc
1321 cctcttcagt gcctactatg ttgcatttct ccccctgtgt tttgtgaaga gtacccagta
1381 ctatgacatg cgctggtcat gtgagcacct cattatggtg tggatcaatg cttttgtcat
1441 gctcaccacg caactgttgc catccaaata ctgtgatttg ctacataaat cagctgctca
1501 cctgggcaag tggcagaagt tggaacatgg gtcctacagc aatgctccac agcacatttg
1561 gtcagaaaat acaatatggc ctcaaggggt gctggtgcgg cacagcagat gtttatatag
1621 agccatgggg ccttacaacg tggcagtgcc ttcagatgta tctcatgccc gcttttattt
1681 cttatttcat cgaccattaa ggctgttaaa tctgctcatc cttattgagg gcagtgtcgt
1741 cttctatcag ctctattcct tgctgcggtc ggagaagtgg aaccacacac tttccatggc
1801 tctcatcctc ttctgcaact actatgtttt atttaaactt ctccgggaca gaatagtatt
1861 aggcagggca tactcctacc cactcaacag ttatgaactc aaggcaaact aagctgcctc
1921 tcaacaatga gggagaactc agataaaaat attttcatac gttctatttt tttcttgtga
1981 tttttataaa tatttaagat attttatatt ttgtatacta ttatgttttg aaagtcggga
2041 agagtaaggg atattaaatg tatccgtaaa caaggtgatg tgatctttca tgtgttagta
2101 tattcgaata atatacatat gagaggtatg cctgtccagt aaagagattg atttgtttgt
2161 atggctctgg aataactcat tcgtttatga acacatctca tgtattactt gacacagtac
2221 ctttggtatg tctgcttttc tttcaatcct cattatcttt agccctcagc tggccagtac
2281 ttattgctaa agaaagggag atcaatggag ttgcctacca gcacccattc tcttttagtt
2341 cagctggcta atagtattgg aatacattgg gaaaagagtg ggttaaagtc ctaggtgggg
2401 ttctctttgt tgcctaccag gagaaagcag taggcttcct ttctaagata cggactcagc
2461 tggtctattt taccctgtga catttaaata tacttttgaa taagctacta tcctgaggct
2521 gagggttttg ctgccacttt tcctgtgttt ccacttctgc ttccaaagat tttcctctta
2581 gttgtttgaa ataatacttt gccagacagg aagtctttag actgcccaca ttcatgaaga
2641 agatgatgtg tggctggatc agtaggagaa gctgagtgca aatgccatgt gggctagagt
2701 atgggaaggt tgaaaattcc aagtaactgg gagagtgggc aagtcctcag ctgaacaatc
2761 ttggatgtag tctagcagca acccacctac aatggcgtta tgtttggagt tatgagggga
2821 agtgaaagat aagaattacc tacagctttg tactcagata atttatatcc aaaatttgtg
2881 ttttaaattt catactccag aactttcatg tttatgagta ttagcctttt aagttatggg
2941 aggtgatata cttagtccat tgatgttgtc acttgtcatc taaacttatg agaccttgtc
3001 ttagagaatc taaaatatat tgtcatatgt tttctgtgct gagtttggtt tgttacactg
3061 tgaagctttt ggtgaaacaa aataagactt atgaagtaaa aagaccaatc atgtcgttga
3121 caagctggct ctgaaaataa ttcttgcaga agagttcctg aaaggcttca ccaaggggaa
3181 gtattgtgag gagtgtttgt aaaaccaagg tacccaatat cagttttatg tttaaatcaa
3241 taattgtttc tttaaatatt ttgatgtgta tacttttttt ttaagttaac attatttggc
3301 attcagtctg agtctgttca accattcaac aaatatatat taaccagtag gcactatatt
3361 aggccctggg gatatagcag tgaatgagaa atgcaaaggt cctacttgca cagagcttac
3421 aatatgcgtg ggggtggggg agttaggtgg tgcagaaaat acagcaaata aatttatgtg
3481 taatataaca ttccctggta gtagtgataa gtgtagcaaa gggaaatcag gacaaggaaa
3541 tagtggtaag aatagcactg ctagaaggca tctttgagga gatgattttt aagcaaagaa
3601 aaagcaagac tgaatcatat aaatagcttt ggggagaatt ccatgttaca gtagcagaaa
3661 gggcagtgcc ctgaggtggg gacaagttgg tatattggaa gaatagcaag aaaatatatt
3721 aggttagttg ctttttaaag tagttcagcc taaatatagt ggttcttgag gtaggggtgg
3781 gaagggtagg gaatctgcca tctttctatt ctttctgtag gatcttgaaa atatgcttct
3841 cttggcagca acattttcat gagattactc agcagttgag agcaaaatgg gtggcatggg
3901 cacagagata tctcatcaaa attgccccaa cttggctcca gcttgggaaa gtaacccaga
3961 aaaccctgat tagagataac agaccagtct tatgaactaa tatgatgccc cttctggctt
4021 gatctgtctt ggtcctatcc taagggaata gcacagaacc agatgctggc ttggctaaat
4081 aagtaagtgg atataagaaa taaataaaaa ttaattttgg ctaatggaat tgcaaagttc
4141 ctcctaccct cacctccaga tatggcagca tacggggcat aagaccgttt agttcaacgt
4201 gttctacaca ttccagctgt tttttgtttg tttgttttgt tgttttgttt ttgtaggggc
4261 cacgttcatg gaagagagaa aaattactag ttacccggat atcctattat agttcatgta
4321 acagaaggga cactatattt gctcactgat agtagaaaaa tgtgtaatca ttaaagaatg
4381 accttttttt gtaaaaaaaa aaaaaaaaaa
//