LOCUS BC003170 3889 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens ubiquitin associated protein 2-like, mRNA (cDNA clone
MGC:4404 IMAGE:2906083), complete cds.
ACCESSION BC003170
VERSION BC003170.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3889)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3889)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 9 Row: f Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40254860.
FEATURES Location/Qualifiers
source 1..3889
/db_xref="H-InvDB:HIT000031487"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4404 IMAGE:2906083"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3889
/gene="UBAP2L"
/gene_synonym="KIAA0144"
/gene_synonym="NICE-4"
/db_xref="GeneID:9898"
/db_xref="HGNC:HGNC:29877"
CDS 50..3313
/gene="UBAP2L"
/gene_synonym="KIAA0144"
/gene_synonym="NICE-4"
/codon_start=1
/product="ubiquitin associated protein 2-like"
/protein_id="AAH03170.1"
/db_xref="GeneID:9898"
/db_xref="HGNC:HGNC:29877"
/translation="MMTSVGTNRARGNWEQPQNQNQTQHKQRPQATAEQIRLAQMISD
HNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKK
KGVSGQKDGGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGT
KSGGPSGRGTERGRRGRGRGRGGSGRRGGRFSAQGMGTFNPADYAEPANTDDNYGNSS
GNTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTI
TAGQRIDLAVLLGKTPSTMENDSSNLDPSQAPSLAQPLVFSNSKQTAISQPASGNTFS
HHSMVSMLGKGFGDVGEAKGGSTTGSQFLEQFKTAQALAQLAAQHSQSGSTTTSSWDM
GSTTQSPSLVQYDLKNPSDSAVHSPFTKRQAFTPSSTMMEVFLQEKSPAVATSTAAPP
PPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAHQKLKQQKKKASLTSKIPALAVEMPGS
ADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTISSNQS
QESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSV
QATQLQTTQSVEGATGSAVKSDSPSTSSIPPLNETVSAASLLTTTNQHSSSLGGLSHS
EEIPNTTTTQHSSTLSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTS
STVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPL
LPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASN
PYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYY
TGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVT
SSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPA
PFMHILTPHQQPHSQILHHHLQQDGQTGSGQRSQTSSIPQKPQTNKSAYNSYSWGAN"
BASE COUNT 993 a 1102 c 891 g 903 t
ORIGIN
1 gagactgagt attctacctt gtaaatactg ttatttgtat atactgtaaa tgatgacatc
61 ggtgggcact aaccgagccc ggggaaactg ggaacaacct caaaaccaaa accagacaca
121 gcacaagcag cggccacagg ccactgcaga acaaattaga cttgcacaga tgatttcgga
181 ccataatgat gctgactttg aggagaaggt gaaacaattg attgatatta caggcaagaa
241 ccaggatgaa tgtgtgattg ctttgcatga ctgcaatgga gatgtcaaca gagctatcaa
301 tgttcttctg gaaggaaacc cagacacgca ttcctgggag atggtcggga agaagaaggg
361 agtctcaggc cagaaggatg gtggccagac ggaatccaat gaggaaggca aagaaaatcg
421 agaccgggac agagactata gtcggcgacg tggtgggcca ccaagacggg ggagaggtgc
481 cagccgtgga cgagagtttc gaggtcagga aaatggattg gatggcacca agagtggagg
541 gccttctgga agaggaacag aaagaggcag aaggggccgt ggccgaggca gaggtggctc
601 tggtaggcga ggaggaaggt tttctgctca aggaatggga acctttaacc cagctgatta
661 tgcagagcca gccaatactg atgataacta tggcaatagc agcggcaata cgtggaacaa
721 cactggccac tttgaaccag atgatgggac gagtgcatgg aggactgcaa cagaggagtg
781 ggggactgaa gattggaatg aagatctttc tgagaccaag atcttcactg cctctaatgt
841 gtcttcagtg cctctgcctg cggagaatgt gacaatcact gctggtcaga gaattgacct
901 tgctgttctg ctggggaaga caccatctac aatggagaat gattcatcta atctggatcc
961 gtctcaggct ccttctctgg cccagcctct ggtgttcagt aattcgaagc agactgccat
1021 atcacagcct gcttcaggga acacattttc tcatcacagt atggtgagca tgttagggaa
1081 aggatttggt gatgtcggtg aagctaaagg cggcagtact acaggctccc agttcttgga
1141 gcaattcaag actgcccaag ccctggctca gttggcagct cagcattctc agtctggaag
1201 caccaccacc tcctcttggg acatgggctc gacgacacaa tccccatcac tggtgcagta
1261 tgatttgaag aacccaagtg attcagcagt gcacagcccc tttacaaagc gccaggcttt
1321 taccccatct tcaaccatga tggaggtgtt ccttcaggag aagtcacctg cagtggctac
1381 ctccacagct gcacctccac ctccgtcttc tcctctgcca agcaaatcca catcggctcc
1441 acagatgtcg cctggatctt cagacaacca gtcctctagc cctcagccgg ctcaccagaa
1501 actgaaacag cagaagaaaa aagcctcctt gacttctaag attcctgctc tggctgtgga
1561 gatgcctggc tcagcagata tctcagggct aaacctgcag tttggggcat tgcagtttgg
1621 gtcagagcct gtcctttctg attatgagtc cacccccacc acgagcgcct cttcaagcca
1681 ggctccaagt agcctgtata ccagcacggc cagtgaatca tcctctacaa tttcatctaa
1741 ccagagtcag gagtctggtt atcagagcgg cccaattcag tcgacaacct atacctccca
1801 aaataatgct cagggccctc tttatgaaca gagatccaca cagactcggc ggtaccccag
1861 ctccatctct tcatcacccc aaaaggacct gactcaggca aagaatggct tcagttctgt
1921 gcaggccacg cagttacaga ccacacaatc tgttgaaggt gctacaggct ctgcagtgaa
1981 atctgattca ccttccactt ctagcatccc ccctctcaat gaaacggtat ctgcagcttc
2041 cttactgacg acaaccaatc agcattcatc ctccttgggt ggcttgagcc acagtgagga
2101 gattccaaat actaccacca cacaacacag cagcacgtta tctacgcagc agaataccct
2161 ttcatcatca acatcttctg ggcgcacttc gacatccact cttttgcaca caagtgtgga
2221 gagtgaggcg aatctccatt cttcctccag cactttttcc accacatcca gcacagtctc
2281 tgcacctccc ccagtggtca gtgtctcctc cagtctcaat agtggcagta gcctgggcct
2341 cagcctaggc agcaactcca ctgtcacagc ctcgactcga agctcagttg ctacgacttc
2401 aggaaaagct cctcccaacc tccctcctgg ggtcccgccg ttgttgccta atccgtatat
2461 tatggctcca gggctgttac atgcctaccc gccacaagta tatggttatg atgacttgca
2521 gatgcttcag acaagatttc cattggatta ctacagcatc ccatttccca cacccactac
2581 tccgctgact gggagggatg gtagcctggc cagcaaccct tattctggtg acctcacaaa
2641 gttcggccgt ggggatgcct cctccccagc cccggccaca accttggccc aaccccaaca
2701 gaaccagacg cagactcacc ataccacgca gcagacattc ctgaacccgg cgctgcctcc
2761 tggctacagt tacaccagcc tgccatacta tacaggggtc ccgggcctcc ccagcacctt
2821 ccagtatggg cctgctgtgt tccctgtggc tcctacctct tccaagcagc atggtgtgaa
2881 tgtcagtgtg aatgcatcgg ccaccccttt ccaacagccg agtggatatg ggtctcatgg
2941 atacaacact ggtgtttcag tcacctccag taacacgggc gtgccagata tctcgggttc
3001 tgtgtactcc aaaacccagc agtcctttga gaaacaaggt tttcattccg gtactcctgc
3061 tgcttccttc aacttgcctt cagccctagg aagtgggggc cccatcaatc cggccacagc
3121 tgctgcctac ccacctgccc cctttatgca cattctgacc ccccatcagc agccgcattc
3181 tcagatcctt caccatcacc tgcagcagga tggccagacg ggcagcgggc aacgtagcca
3241 gaccagctcc atcccgcaga agccccagac caacaagtct gcctacaaca gctacagctg
3301 gggggccaac tgaggccctg accctcttct cccggtccca tcttctgaga gggcttctca
3361 gcctggaaac tatggaaaca gcatcaaaga gaaaggaatg tggggggttt ccgctgcccc
3421 ccacccccag cggcccaccc catgcctcag cttcatgtct gtcccattcc tataccatcc
3481 ccaccctgtt gtatgtatta taggatttgt attttctcct tttttttccc ccttccattc
3541 cttctcccct cttgcattca agattatgaa actttgctat gggccctgca cttcctttgc
3601 ttcctcctgt tcaccctggt ggtgtacgga tgaggcgggg aggtgggacc cccaaacata
3661 tatcagccca acagccctaa gtctccttct ttattattag gaaaacaaca acaacaacaa
3721 acaaaaaaat ggcgtcatga atatgaacag cattgtcaga tgaattagtt gaagtggttt
3781 tttttttgtt tttttttttt tttttgtact gtgtcctcaa atttaatgga ttaatgtgtc
3841 ttgtatatat aaaaagaaaa cctctacctt caaaaaaaaa aaaaaaaaa
//