LOCUS BC003158 1428 bp mRNA linear HUM 16-AUG-2008
DEFINITION Homo sapiens lysosomal protein transmembrane 4 alpha, mRNA (cDNA
clone MGC:4121 IMAGE:2958870), complete cds.
ACCESSION BC003158
VERSION BC003158.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1428)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1428)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 9 Row: f Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 41352690.
FEATURES Location/Qualifiers
source 1..1428
/db_xref="H-InvDB:HIT000031475"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4121 IMAGE:2958870"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1428
/gene="LAPTM4A"
/gene_synonym="HUMORF13"
/gene_synonym="LAPTM4"
/gene_synonym="Mtrp"
/db_xref="GeneID:9741"
/db_xref="HGNC:HGNC:6924"
CDS 149..850
/gene="LAPTM4A"
/gene_synonym="HUMORF13"
/gene_synonym="LAPTM4"
/gene_synonym="Mtrp"
/codon_start=1
/product="lysosomal protein transmembrane 4 alpha"
/protein_id="AAH03158.1"
/db_xref="GeneID:9741"
/db_xref="HGNC:HGNC:6924"
/translation="MVSMSFKRNRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMA
ILLTVEVTHPNSMPAVNIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGSI
SYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEYLDQLPDFPYKDDLLALDSSC
LLFIVLVFFALFIIFKAYLINCVWNCYKYINNRNVPEIAVYPAFEAPPQYVLPTYEMA
VKMPEKEPPPPYLPA"
BASE COUNT 360 a 279 c 312 g 477 t
ORIGIN
1 cgcgaagaag ctggcagggg cacgagccgg gggcgggttt gaagacgcgt cgttgggttt
61 tggaggccgt gaaacagccg tttgagtttg gctgcgggtg gagaacgttt gtcaggggcc
121 cggccaagaa ggaggcccgc ctgttacgat ggtgtccatg agtttcaagc ggaaccgcag
181 tgaccggttc tacagcaccc ggtgctgcgg ctgttgccat gtccgcaccg ggacgatcat
241 cctggggacc tggtacatgg tagtaaacct attgatggca attttgctga ctgtggaagt
301 gactcatcca aactccatgc cagctgtcaa cattcagtat gaagtcatcg gtaattacta
361 ttcttctgag agaatggctg ataatgcctg tgttcttttt gccgtctctg ttcttatgtt
421 tataatcagt tcaatgctgg tttatggatc aatttcttat caagtgggtt ggctgattcc
481 attcttctgt taccgacttt ttgacttcgt cctcagttgc ctggttgcta ttagttctct
541 cacctatttg ccaagaatca aagaatatct ggatcaacta cctgattttc cctacaaaga
601 tgacctcctg gccttggact ccagctgcct cctgttcatt gttcttgtgt tctttgcctt
661 attcatcatt tttaaggctt atctaattaa ctgtgtttgg aactgctata aatacatcaa
721 caaccgaaac gtgccggaga ttgctgtgta ccctgccttt gaagcacctc ctcagtacgt
781 tttgccaacc tatgaaatgg ccgtgaaaat gcctgaaaaa gaaccaccac ctccttactt
841 acctgcctga agaaattctg cctttgacaa taaatcctat accagctttt tgtttgttta
901 tgttacagaa tgctgcaatt cagggctctt caaacttgtt tgatataaaa tatgttgtct
961 tttgtttaag catttatttt caaacactaa ggagcttttt gacatctgtt aaacgtcttt
1021 ttgttttttt gttaagtctt ttacatttta atagtttttg aagacaatct aggttaagca
1081 agagcaaagt gccattgttt gcctttaatt ggggggtggg aagggaaaga gggtacttgc
1141 cacatagttt cctttttaac tgcactttct ttatataatc gtttgcattt tgttacttgc
1201 taccctgagt actttcagga agactgactt aaatattcgg ggtgagtaag tagttgggta
1261 taagatctga acttttcatc tgcagaggca agaaaaatat ttgacattgt gacttgactg
1321 tggaagatga tggttgcatg tttctagttt gtatatgttt ccatctttgt gataagatga
1381 tttaataaat ctctttaaat acttaaaaaa aaaaaaaaaa aaaaaaaa
//