LOCUS BC003142 1173 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens vesicle transport through interaction with t-SNAREs homolog 1B (yeast), mRNA (cDNA clone MGC:3767 IMAGE:2958320), complete cds. ACCESSION BC003142 VERSION BC003142.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1173) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1173) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (13-FEB-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 9 Row: l Column: 20 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 5454165. FEATURES Location/Qualifiers source 1..1173 /db_xref="H-InvDB:HIT000031461" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:3767 IMAGE:2958320" /tissue_type="Kidney, renal cell adenocarcinoma" /clone_lib="NIH_MGC_14" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1173 /gene="VTI1B" /gene_synonym="VTI1" /gene_synonym="VTI1L" /gene_synonym="VTI2" /db_xref="GeneID:10490" /db_xref="HGNC:HGNC:17793" /db_xref="MIM:603207" CDS 213..911 /gene="VTI1B" /gene_synonym="VTI1" /gene_synonym="VTI1L" /gene_synonym="VTI2" /codon_start=1 /product="vesicle transport through interaction with t-SNAREs homolog 1B (yeast)" /protein_id="AAH03142.1" /db_xref="GeneID:10490" /db_xref="HGNC:HGNC:17793" /db_xref="MIM:603207" /translation="MASSAASSEHFEKLHEIFRGLHEDLQGVPERLLGTAGTEEKKKL IRDFDEKQQEANETLAEMEEELRYAPLSFRNPMMSKLRNYRKDLAKLHREVRSTPLTA TPGGRGDMKYGIYAVENEHMNRLQSQRAMLLQGTESLNRATQSIERSHRIATETDQIG SEIIEELGEQRDQLERTKSRLVNTSENLSKSRKILRSMSRKVTTNKLLLSIIILLELA ILGGLVYYKFFRSH" BASE COUNT 337 a 274 c 333 g 229 t ORIGIN 1 ctttcgcgcc ggcgctccag caatcactgg ctggagaagg tgggcgttcc ggctcgagag 61 gaccctgccg cggctccgga agagcctcgt cctgggcggc ggtggtgcgg cggtcgccgt 121 tatggccact gggctgggcg gctgaccgcc gggctaggaa agggcccagg gccccgaatc 181 tcggtggccg ctgctccagc gcggcctgcg ccatggcctc ctccgccgcc tcctcggagc 241 atttcgagaa gctgcacgag atcttccgcg gcctccatga agacctacaa ggggtgcccg 301 agcggctgct ggggacggcg gggaccgaag aaaagaagaa attgatcagg gattttgatg 361 aaaagcaaca ggaagcaaat gaaacgctgg cagagatgga ggaggagcta cgttatgcac 421 ccctgtcttt ccgaaacccc atgatgtcta agcttcgaaa ctaccggaag gaccttgcta 481 aactccatcg ggaggtgaga agcacacctt tgacagccac acctggaggc cgaggagaca 541 tgaaatatgg catatatgct gtagagaatg agcatatgaa tcggctacag tctcaaaggg 601 caatgcttct gcagggcact gaaagcctga accgggccac ccaaagtatt gaacgttctc 661 atcggattgc cacagagact gaccagattg gctcagaaat catagaagag ctgggggaac 721 aacgagacca gttagaacgt accaagagta gactggtaaa cacaagtgaa aacttgagca 781 aaagtcggaa gattctccgt tcaatgtcca gaaaagtgac aaccaacaag ctgctgcttt 841 ccattatcat cttactggag ctcgccatcc tgggaggcct ggtttactac aaattctttc 901 gcagccattg aacttctata gggaagggtt tgtggaccag aactttgacc ttgtgaatgc 961 atgatgttag ggatgtggat agaataagca tattgctgct gtgggctgac agttcaagga 1021 tgcactgtat agccaggctg tgggaggagg gaggaaagat gaaaaaccac ttaaatgtga 1081 aggaacaaca gcaacaagac cagtatgata taccaaggta ataaatgctg tttatgactt 1141 ctttaaaaaa aaaaaaaaaa aaaaaaaaaa aaa //