LOCUS BC003139 2021 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens sequestosome 1, mRNA (cDNA clone MGC:3682
IMAGE:2906264), complete cds.
ACCESSION BC003139
VERSION BC003139.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2021)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2021)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 9 Row: h Column: 6.
FEATURES Location/Qualifiers
source 1..2021
/db_xref="H-InvDB:HIT000031459"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3682 IMAGE:2906264"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2021
/gene="SQSTM1"
/gene_synonym="p60"
/gene_synonym="p62"
/gene_synonym="ZIP3"
/db_xref="GeneID:8878"
/db_xref="HGNC:HGNC:11280"
/db_xref="MIM:601530"
CDS 19..1341
/gene="SQSTM1"
/gene_synonym="p60"
/gene_synonym="p62"
/gene_synonym="ZIP3"
/codon_start=1
/product="sequestosome 1"
/protein_id="AAH03139.1"
/db_xref="GeneID:8878"
/db_xref="HGNC:HGNC:11280"
/db_xref="MIM:601530"
/translation="MASLTVKAYLLGKEDAAREIRRFSFCCSPEPEAEAEAAAGPGPC
ERLLSRVAALFPALRPGGFQAHYRDEDGDLVAFSSDEELTMAMSYVKDDIFRIYIKEK
KECRRDHRPPCAQEAPRNMVHPNVICDGCNGPVVGTRYKCSVCPDYDLCSVCEGKGLH
RGHTKLAFPSPFGHLSEGFSHSRWLRKVKHGHFGWPGWEMGPPGNWSPRPPRAGEARP
GPTAESASGPSEDPSVNFLKNVGESVAAALSPLGIEVDIDVEHGGKRSRLTPVSPESS
STEEKSSSQPSSCCSDPSKPGGNVEGATQSLAEQMRKIALESEGRPEEQMESDNCSGG
DDDWTHLSSKEVDPSTGELQSLQMPESEGPSSLDPSQEGPTGLKEAALYPHLPPEADP
RLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQYSKHPPPL"
BASE COUNT 432 a 570 c 586 g 433 t
ORIGIN
1 gccagctcgc cgctcgctat ggcgtcgctc accgtgaagg cctaccttct gggcaaggag
61 gacgcggcgc gcgagattcg ccgcttcagc ttctgctgca gccccgagcc tgaggcggaa
121 gccgaggctg cggcgggtcc gggaccctgc gagcggctgc tgagccgggt ggccgccctg
181 ttccccgcgc tgcggcctgg cggcttccag gcgcactacc gcgatgagga cggggacttg
241 gttgcctttt ccagtgacga ggaattgaca atggccatgt cctacgtgaa ggatgacatc
301 ttccgaatct acattaaaga gaaaaaagag tgccggcggg accaccgccc accgtgtgct
361 caggaggcgc cccgcaacat ggtgcacccc aatgtgatct gcgatggctg caatgggcct
421 gtggtaggaa cccgctacaa gtgcagcgtc tgcccagact acgacttgtg tagcgtctgc
481 gagggaaagg gcttgcaccg ggggcacacc aagctcgcat tccccagccc cttcgggcac
541 ctgtctgagg gcttctcgca cagccgctgg ctccggaagg tgaaacacgg acacttcggg
601 tggccaggat gggaaatggg tccaccagga aactggagcc cacgtcctcc tcgtgcaggg
661 gaggcccgcc ctggccccac ggcagaatca gcttctggtc catcggagga tccgagtgtg
721 aatttcctga agaacgttgg ggagagtgtg gcagctgccc ttagccctct gggcattgaa
781 gttgatatcg atgtggagca cggagggaaa agaagccgcc tgacccccgt ctctccagag
841 agttccagca cagaggagaa gagcagctca cagccaagca gctgctgctc tgatcccagc
901 aagccgggtg ggaatgttga gggcgccacg cagtctctgg cggagcagat gagaaagatc
961 gccttggagt ccgaggggcg ccctgaggaa cagatggagt cggataactg ttcaggagga
1021 gatgatgact ggacccatct gtcttcaaaa gaagtggacc cgtctacagg tgaactccag
1081 tccctacaga tgccagaatc cgaagggcca agctctctgg acccctccca ggagggaccc
1141 acagggctga aggaagctgc cttgtaccca catctcccgc cagaggctga cccgcggctg
1201 attgagtccc tctcccagat gctgtccatg ggcttctctg atgaaggcgg ctggctcacc
1261 aggctcctgc agaccaagaa ctatgacatc ggagcggctc tggacaccat ccagtattca
1321 aagcatcccc cgccgttgtg accacttttg cccacctctt ctgcgtgccc ctcttctgtc
1381 tcatagttgt gttaagcttg cgtagaattg caggtctctg tacgggccag tttctctgcc
1441 ttcttccagg atcaggggtt agggtgcaag aagccattta gggcagcaaa acaagtgaca
1501 tgaagggagg gtccctgtgt gtgtgtgtgt gctgatgttt cctgggtgcc ctggctcctt
1561 gcagcagggc tgggcctgcg agacccaagg ctcactgcag cgcgctcctg acccctccct
1621 gcaggggcta cgttagcagc ccagcacata gcttgcctaa tggctttcac tttctctttt
1681 gttttaaatg actcataggt ccctgacatt tagttgatta ttttctgcta cagacctggt
1741 acactctgat tttagataaa gtaagcctag gtgttgtcag caggcaggct ggggaggcca
1801 gtgttgtggg cttcctgctg ggactgagaa ggctcacgaa gggcatccgc aatgttggtt
1861 tcactgagag ctgcctcctg gtctcttcac cactgtagtt ctctcatttc caaaccatca
1921 gctgctttta aaataagatc tctttgtagc catcctgtta aatttgtaaa caatctaatt
1981 aaatggcatc agcactttaa ccaaaaaaaa aaaaaaaaaa a
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