LOCUS BC003133 3702 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens HLA-B associated transcript 3, mRNA (cDNA clone
MGC:3619 IMAGE:2957896), complete cds.
ACCESSION BC003133
VERSION BC003133.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3702)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3702)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 9 Row: p Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 18375633.
FEATURES Location/Qualifiers
source 1..3702
/db_xref="H-InvDB:HIT000031453_05"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3619 IMAGE:2957896"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3702
/gene="BAT3"
/gene_synonym="D6S52E"
/gene_synonym="G3"
/db_xref="GeneID:7917"
/db_xref="HGNC:HGNC:13919"
/db_xref="MIM:142590"
CDS 209..3589
/gene="BAT3"
/gene_synonym="D6S52E"
/gene_synonym="G3"
/codon_start=1
/product="HLA-B associated transcript 3"
/protein_id="AAH03133.1"
/db_xref="GeneID:7917"
/db_xref="HGNC:HGNC:13919"
/db_xref="MIM:142590"
/translation="MEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKE
HIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPPQTHLPSGASSGT
GSASATHGGGSPPGTRGPGASVHDRNANSYVMVGTFNLPSDGSAVDVHINMEQAPIQS
EPRVRLVMAQHMIRDIQTLLSRMECRGGPQPQHSQPPPQPPAVTPEPVALSSQTSEPV
ESEAPPREPMEAEEVEERAPAQNPELTPGPAPAGPTPAPETNAPNHPSPAEYVEVLQE
LQRLESRLQPFLQRYYEVLGAAATTDYNNNHEGREEDQRLINLVGESLRLLGNTFVAL
SDLRCNLACTPPRHLHVVRPMSHYTTPMVLQQAAIPIQINVGTTVTMTGNGTRPPPTP
NAEAPPPGPGQASSVAPSSTNVESSAEGAPPPGPAPPPATSHPRVIRISHQSVEPVVM
MHMNIQDSGTQPGGVPSAPTGPLGPPGHGQTLGQQVPGFPTAPTRVVIARPTPPQARP
SHPGGPPVSGTLQGAGLGTNASLAQMVSGLVGQLLMQPVLVAQGTPGMAPPPAPATAS
ASAGTTNTATTAGPAPGGPAQPPPTPQPSMADLQFSQLLGNLLGPAGPGAGGSGVASP
TITVAMPGVPAFLQGMTDFLQATQTAPPPPPPPPPPPPAPEQQTMPPPGSPSGGAGSP
GGLGLESLSPEFFTSVVQGVLSSLLGSLGARAGSSESIAAFIQRLSGSSNIFEPGADG
ALGFFGALLSLLCQNFSMVDVVMLLHGHFQPLQRLQPQLRSFFHQHYLGGQEPTPSNI
RMATHTLITGLEEYVRESFSLVQVQPGVDIIRTNLEFLQEQFNSIAAHVLHCTDSGFG
ARLLELCNQGLFECLALNLHCLGGQQMELAAVINGRIRRMSRGVNPSLVSWLTTMMGL
RLQVVLEHMPVGPDAILRYVRRVGDPPQPLPEEPMEVQGAERASPEPQRENASPAPGT
TAEEAMSRGPPPAPEGGSRDEQDGASAETEPWAAAVPPEWVPIIQQDIQSQRKVKPQP
PLSDAYLSGMPAKRRKTMQGEGPQLLLSEAVSRAAKAAGARPLTSPESLSRDLEAPEV
QESYRQQLRSDIQKRLQEDPNYSPQRFPNAQRAFADDP"
BASE COUNT 757 a 1164 c 1034 g 747 t
ORIGIN
1 ctcctcgggg tgctcggctc cctcccacct aggccggccc cggcccgact cgccctcaga
61 aactcactgt ttggggctgc ggactttctc gtcgtgcccc acaaaagtaa agcttgggga
121 cctgggggga gccggaagta tcgcttcgag atccccaaat actatcgggg aaacggaagt
181 ggccgtcggt ggcagagacc tgtcggccat ggagcctaat gatagtacca gtaccgctgt
241 ggaggagcct gacagcttgg aggtgttggt gaagaccttg gactctcaaa ctcgtacctt
301 tattgtgggg gcccagatga atgtaaaaga gtttaaggag cacattgctg cctctgtcag
361 catcccatct gaaaaacaac ggctcattta ccagggacga gttctgcaag atgataagaa
421 gcttcaggaa tacaatgttg ggggaaaggt tatccacctg gtggaacggg ctcctcctca
481 gactcacctc ccttctgggg catcttctgg gacggggtct gcctcagcca ctcatggtgg
541 gggatccccc cctggtactc gggggcctgg ggcctctgtt catgaccgga atgccaacag
601 ctatgtcatg gttggaacct tcaatcttcc tagtgacggc tctgctgtgg atgttcacat
661 caacatggaa caggccccga ttcagagtga gccccgggta cggctggtga tggctcagca
721 catgatcagg gatatacaga ccttactatc ccggatggag tgtcgaggag ggccccaacc
781 gcagcacagt cagccgcccc cgcagccacc ggctgtgacc ccggagccag tagccttgag
841 ctctcaaaca tcagaaccag ttgaaagtga agcacctccc cgggagccca tggaggcaga
901 agaagtggag gagcgtgccc cagcccagaa cccggagctc actcctggcc cagccccagc
961 gggcccaaca cctgccccgg aaacaaatgc acccaaccat ccttcccctg cggagtatgt
1021 cgaggtgctc caggagctac agcggctgga gagtcgcctc cagcccttct tgcagcgcta
1081 ctacgaggtt ctgggtgctg ctgccaccac ggactacaat aacaatcacg agggccggga
1141 ggaggatcag cggttgatca acttggtagg ggagagcctg cgactgctgg gcaacacctt
1201 tgttgcactg tctgacctgc gctgcaatct ggcctgcacg cccccacgac acctgcatgt
1261 ggtccggcct atgtctcact acaccacccc catggtgctc cagcaggcag ccattcccat
1321 acagatcaat gtgggaacca ctgtgaccat gacaggaaat gggactcggc cccccccaac
1381 tcccaatgca gaggcacctc cccctggtcc tgggcaggcc tcatccgtgg ctccgtcttc
1441 taccaatgtc gagtcctcag ctgagggggc tcccccgcca ggtccagctc ccccgccagc
1501 caccagccac ccgagggtca tccggatttc ccaccagagt gtggaacccg tggtcatgat
1561 gcacatgaac attcaagatt ctggcacaca gcctggtggt gttccgagtg ctcccactgg
1621 ccccctggga ccccctggtc atggccaaac cctgggacag caggtgccag gcttcccaac
1681 agctccaacc cgggtggtga ttgcccggcc cactcctcca caggctcggc cttcccatcc
1741 tggagggccc ccagtctctg ggacactgca gggcgccggt ctgggtacca atgcctcgtt
1801 ggcccagatg gtgagcggcc ttgtggggca gcttcttatg cagccagtcc ttgtggctca
1861 ggggacccca ggtatggctc caccgccagc ccctgccact gcttctgcca gtgctggcac
1921 caccaacaca gctaccacag ctggccccgc tcctgggggg cctgcccagc ctccacccac
1981 ccctcaaccc tccatggctg atcttcagtt ctctcagctt ctggggaacc tgctagggcc
2041 tgcagggcca ggggctggag ggtctggtgt ggcttctccc accatcactg tggcgatgcc
2101 tggtgtccct gcctttctcc aaggcatgac tgacttcttg caggcaacac agacagcccc
2161 tccaccaccc ccacctcctc cacccccacc acctgcccca gagcagcaga ccatgccccc
2221 accaggctcc ccttctggtg gcgcagggag tcctggaggc ctgggtcttg agagcctgtc
2281 accggagttt tttacctcag tggtgcaggg tgtgctcagc tccctgctgg gctccctggg
2341 ggctcgggct ggcagcagtg aaagtattgc tgccttcata caacgcctca gtggatccag
2401 caacatcttt gagcctggag ctgatggggc ccttggattc tttggggcct tgctttctct
2461 tctgtgccag aacttctcta tggtggacgt agtgatgctt ctccatgggc atttccagcc
2521 actacaacgg ctccagcccc agctgcgatc cttcttccac cagcactacc tgggtggtca
2581 ggagcccaca cccagtaaca tccggatggc aacccacaca ttgatcacgg ggctagaaga
2641 gtatgtgcgg gagagttttt ccttggtgca ggttcagcca ggtgtggaca tcatccggac
2701 aaacctggaa tttctccaag agcagtttaa tagcattgct gcgcatgtgc tgcattgcac
2761 agatagtgga tttggggccc ggttgctgga gttgtgtaac caaggcctgt ttgaatgcct
2821 ggccctaaac ctgcactgct tggggggaca gcagatggag cttgctgctg ttatcaatgg
2881 ccgaattcgt cgtatgtctc gtggggtgaa tccctccttg gtgagctggc tgaccactat
2941 gatgggactg aggcttcagg tggtactgga gcacatgcct gtaggccctg atgccattct
3001 cagatacgtt cgcagggttg gtgatccccc ccagccactt cctgaggagc caatggaagt
3061 tcagggagca gaaagagctt cccctgagcc tcagcgggag aatgcttccc cagcccctgg
3121 aacaacagca gaagaggcca tgtcccgagg tccacctcct gctcctgagg ggggctcccg
3181 ggatgaacag gatggagctt cagctgagac agaaccttgg gcagctgcag tccccccaga
3241 atgggtccct attatccagc aggacattca gagccagcgg aaggtgaaac cgcagccccc
3301 tctgagtgat gcctacctca gtggtatgcc tgccaagaga cgcaagacga tgcagggtga
3361 gggcccccag ctgcttctct cagaggctgt gagccgggca gctaaggcag ccggagctcg
3421 gcccctgacg agccccgaga gcctgagccg ggacctggag gcaccagagg ttcaggagag
3481 ctacaggcag cagctccggt ctgatataca aaaacgactg caggaagacc ccaactacag
3541 tccccagcgc ttccccaatg cccagcgggc ctttgctgat gatccttagc tctttgctct
3601 atggcccttc ctcatcaggg gaccgtttcc cccctcttcc ttcacagtat ttaagaaata
3661 aaagtcggat ttttctggca aaaaaaaaaa aaaaaaaaaa aa
//