LOCUS BC003128 2522 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens zinc finger, DHHC-type containing 9, mRNA (cDNA clone
MGC:3355 IMAGE:2957911), complete cds.
ACCESSION BC003128
VERSION BC003128.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2522)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2522)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 9 Row: f Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 56682971.
FEATURES Location/Qualifiers
source 1..2522
/db_xref="H-InvDB:HIT000031449"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3355 IMAGE:2957911"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2522
/gene="ZDHHC9"
/gene_synonym="CGI-89"
/gene_synonym="DHHC9"
/gene_synonym="ZNF379"
/db_xref="GeneID:51114"
/db_xref="HGNC:HGNC:18475"
CDS 381..1475
/gene="ZDHHC9"
/gene_synonym="CGI-89"
/gene_synonym="DHHC9"
/gene_synonym="ZNF379"
/codon_start=1
/product="zinc finger, DHHC-type containing 9"
/protein_id="AAH03128.1"
/db_xref="GeneID:51114"
/db_xref="HGNC:HGNC:18475"
/translation="MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFL
ILGTCTLFFAFECRYLAVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEA
AFIEMEIEATNGAVPQGQRPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDN
CVERFDHHCPWVGNCVGKRNYRYFYLFILSLSLLTIYVFAFNIVYVALKSLKIGFLET
LKETPGTVLEVLICFFTLWSVVGLTGFHTFLVALNQTTNEDIKGSWTGKNRVQNPYSH
GNIVKNCCEVLCGPLPPSVLDRRGILPLEESGSRPPSTQETSSSLLPQSPAPTEHLNS
NEMPEDSSTPEEMPPPEPPEPPQEAAEAEK"
BASE COUNT 573 a 691 c 597 g 661 t
ORIGIN
1 gtgggcggtt gccacagctg gtttagggcc ccgaccactg gggccccttg tcaggaggag
61 acagcctccc ggcccgggga ggacaagtcg ctgccacctt tggctgccga cgtgattccc
121 tgggacggtc cgtttcctgc cgtcagctgc cggccgagtt gggtctccgt ggttcaggcc
181 ggctccccct tcctggtctc ccttctcccg ctgggccggt ttatcgggag gagattgtct
241 tccagggcta gcaattggac ttttgatgat gtttgaccca gcggcaggaa tagcaggcaa
301 cgtgatttca aagctgggct cagcctctgt ttcttctctc gtgtaatcgc aaaacccatt
361 ttggagcagg aattccaatc atgtctgtga tggtggtgag aaagaaggtg acacggaaat
421 gggagaaact cccaggcagg aacacctttt gctgtgatgg ccgcgtcatg atggcccggc
481 aaaagggcat tttctacctg acccttttcc tcatcctggg gacatgtaca ctcttcttcg
541 cctttgagtg ccgctacctg gctgttcagc tgtctcctgc catccctgta tttgctgcca
601 tgctcttcct tttctccatg gctacactgt tgaggaccag cttcagtgac cctggagtga
661 ttcctcgggc gctaccagat gaagcagctt tcatagaaat ggagatagaa gctaccaatg
721 gtgcggtgcc ccagggccag cgaccaccgc ctcgtatcaa gaatttccag ataaacaacc
781 agattgtgaa actgaaatac tgttacacat gcaagatctt ccggcctccc cgggcctccc
841 attgcagcat ctgtgacaac tgtgtggagc gcttcgacca tcactgcccc tgggtgggga
901 attgtgttgg aaagaggaac taccgctact tctacctctt catcctttct ctctccctcc
961 tcacaatcta tgtcttcgcc ttcaacatcg tctatgtggc cctcaaatct ttgaaaattg
1021 gcttcttgga gacattgaaa gaaactcctg gaactgttct agaagtcctc atttgcttct
1081 ttacactctg gtccgtcgtg ggactgactg gatttcatac tttcctcgtg gctctcaacc
1141 agacaaccaa tgaagacatc aaaggatcat ggacagggaa gaatcgcgtc cagaatccct
1201 acagccatgg caatattgtg aagaactgct gtgaagtgct gtgtggcccc ttgcccccca
1261 gtgtgctgga tcgaaggggt attttgccac tggaggaaag tggaagtcga cctcccagta
1321 ctcaagagac cagtagcagc ctcttgccac agagcccagc ccccacagaa cacctgaact
1381 caaatgagat gccggaggac agcagcactc ccgaagagat gccacctcca gagcccccag
1441 agccaccaca ggaggcagct gaagctgaga agtagcctat ctatggaaga gacttttgtt
1501 tgtgtttaat tagggctatg agagatttca ggtgagaagt taaacctgag acagagagca
1561 agtaagctgt cccttttaac tgtttttctt tggtctttag tcacccagtt gcacactggc
1621 attttcttgc tgcaagcttt tttaaatttc tgaactcaag gcagtggcag aagatgtcag
1681 tcacctctga taactggaaa aatgggtctc ttgggccctg gcactggttc tccatggcct
1741 cagccacagg gtccccttgg accccctctc ttccctccag atcccagccc tcctgcttgg
1801 ggtcactggt ctcattctgg ggctaaaagt ttttgagact ggctcaaatc ctcccaagct
1861 gctgcacgtg ctgagtccag aggcagtcac agagacctct ggccagggga tcctaactgg
1921 gttcttgggg tcttcaggac tgaagaggag ggagagtggg gtcagaagat tctcctggcc
1981 accaagtgcc agcattgccc acaaatcctt ttaggaatgg gacaggtacc ttccacttgt
2041 tgtatttatt agtgtagctt ctcctttgtc tcccatccac tctgacacct aagccccact
2101 cttttcccat tagatatatg taagtagttg tagtagagat aataattgac atttctcgta
2161 gactacccag aaactttttt aatacctgtg ccattctcaa taagaattta tgagatgcca
2221 gcggcatagc ccttcacact ctctgtctca tctctcctcc tttctcatta gcccctttta
2281 atttgttttt ccttttgact cctgctccca ttaggagcag gaatggcagt aataaaagtc
2341 tgcactttgg tcatttcttt tcctcagagg aagcctgagt gctcacttaa acactatccc
2401 ctcagactcc ctgtgtgagg cctgcagagg ccctgaatgc acaaatggga aaccaaggca
2461 cagagaggct ctcctctcct ctcctctccc ccgatgtacc ctcaaaaaaa aaaaaaaaaa
2521 aa
//