LOCUS BC003096 1034 bp mRNA linear HUM 24-FEB-2004
DEFINITION Homo sapiens PDZ and LIM domain 4, mRNA (cDNA clone MGC:1645
IMAGE:3501794), complete cds.
ACCESSION BC003096
VERSION BC003096.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1034)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1034)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (13-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
Schein, Asim Siddiqui, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 6 Row: m Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 19923180.
FEATURES Location/Qualifiers
source 1..1034
/db_xref="H-InvDB:HIT000031424"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1645 IMAGE:3501794"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1034
/gene="PDLIM4"
/gene_synonym="RIL"
/db_xref="GeneID:8572"
/db_xref="MIM:603422"
CDS 29..769
/gene="PDLIM4"
/gene_synonym="RIL"
/codon_start=1
/product="PDLIM4 protein"
/protein_id="AAH03096.1"
/db_xref="GeneID:8572"
/db_xref="MIM:603422"
/translation="MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALC
PGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLSVSRPEGRSWPSAPDDSKAQAHRI
HIDPEIQDGSPTTSRRPSGTGTGPEDGRPSLGSPYGQPPRFPVPHNGSSEATLPAQMS
TLHVSPPPSADPARGLPRSRDCRVDLGSEVYRMLREPAEPVAAEPKQSGSFRYLQGML
EAGEGGAPSSRHGTSSTIPSASCAVTAA"
misc_feature 29..274
/gene="PDLIM4"
/gene_synonym="RIL"
/note="PDZ; Region: PDZ domain, PSD95(post synaptic
density protein) DlgA (Drosophila disc large tumor
suppressor) ZO1, a mammalian tight junction protein
domain"
/db_xref="CDD:cd00136"
BASE COUNT 220 a 349 c 300 g 165 t
ORIGIN
1 caggctccgg ctgcggctcc agcccgcgat gccccattcc gtgaccctgc gcgggccttc
61 gccctggggc ttccgcctgg tgggcggccg ggacttcagc gcgcccctca ccatctcacg
121 ggtccatgct ggcagcaagg ctgcattggc tgccctgtgc ccaggagacc tgatccaggc
181 catcaatggt gagagcacag agctcatgac acacctggag gcacagaacc gcatcaaggg
241 ctgccacgat cacctcacac tgtctgtgag caggcctgag ggcaggagct ggcccagtgc
301 ccctgatgac agcaaggctc aggcacacag gatccacatc gatcctgaga tccaggacgg
361 cagcccaaca accagcaggc ggccctcagg caccgggact gggccagaag atggcagacc
421 aagcctggga tctccatatg gacaaccccc tcgctttcca gtccctcaca atggcagcag
481 cgaggccacc ctgccagccc agatgagcac cctgcatgtg tctccacccc ccagcgctga
541 cccagccaga ggcctcccgc ggagccggga ctgcagagtc gacctgggct ccgaggtgta
601 caggatgctg cgggagccgg ccgagcccgt ggccgcggag cccaagcagt caggctcctt
661 ccgctacttg cagggcatgc tagaggccgg cgagggcggg gcaccatcgt caaggcacgg
721 gacaagctct accatcccga gtgcttcatg tgcagtgact gcggcctgaa cctcaagcag
781 cgtggttact tctttctgga cgagcggctc tactgtgaga gccacgccaa ggcgcgcgtg
841 aagccgcccg agggctacga cgtggtggcg gtgtacccca atgccaaggt ggaactcgtc
901 tgagctggga ccctgctccc acccctgctt cttaaggtcc ctgctcggcc ggtgtaaata
961 tgtttcaccc tgtccctcta ataaagctcc tctgctccac cttgaaaaaa aaaaaaaaaa
1021 aaaaaaaaaa aaaa
//