LOCUS BC002992 1609 bp mRNA linear HUM 30-JAN-2008
DEFINITION Homo sapiens VAMP (vesicle-associated membrane protein)-associated
protein A, 33kDa, mRNA (cDNA clone MGC:3745 IMAGE:2822547),
complete cds.
ACCESSION BC002992
VERSION BC002992.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1609)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1609)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 9 Row: l Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 37588849.
FEATURES Location/Qualifiers
source 1..1609
/db_xref="H-InvDB:HIT000031340"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3745 IMAGE:2822547"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1609
/gene="VAPA"
/gene_synonym="hVAP-33"
/gene_synonym="VAP-33"
/gene_synonym="VAP-A"
/gene_synonym="VAP33"
/db_xref="GeneID:9218"
/db_xref="HGNC:HGNC:12648"
/db_xref="MIM:605703"
CDS 214..963
/gene="VAPA"
/gene_synonym="hVAP-33"
/gene_synonym="VAP-33"
/gene_synonym="VAP-A"
/gene_synonym="VAP33"
/codon_start=1
/product="VAMP (vesicle-associated membrane
protein)-associated protein A, 33kDa"
/protein_id="AAH02992.2"
/db_xref="GeneID:9218"
/db_xref="HGNC:HGNC:12648"
/db_xref="MIM:605703"
/translation="MASASGAMAKHEQILVLDPPTDLKFKGPFTDVVTTNLKLRNPSD
RKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVMLQPFDYDPNEKSKHKFMVQTIFA
PPNTSDMEAVWKEAKPDELMDSKLRCVFEMPNENDKLNDMEPSKAVPLNASKQDGPMP
KPHSVSLNDTETRKLMEECKRLQGEMMKLSEENRHLRDEGLRLRKVAHSDKPGSTSTA
SFRDNVTSPLPSLLVVIAAIFIGFFLGKFIL"
BASE COUNT 471 a 346 c 342 g 450 t
ORIGIN
1 ggctggtgtg gggttgagtc agttgtggga cccggagctg ctgacccagc gggtggccca
61 ccgaaccggt gacacagcgg caggcgttag ggctcgggag ccgcgagcct ggcctcgtcc
121 tagagctcgg ccgagccgtc gccgccgtcg tcccccgccc ccagtcagca aaccgccgcc
181 gcgggcgcgc ccccgctctg cgctgtctct ccgatggcgt ccgcctcagg ggccatggcg
241 aagcacgagc agatcctggt cctcgatccg cccacagacc tcaaattcaa aggccccttc
301 acagatgtag tcactacaaa tcttaaattg cgaaatccat cggatagaaa agtgtgtttc
361 aaagtgaaga ctacagcacc tcgccggtac tgtgtgaggc ccaacagtgg aattattgac
421 ccagggtcaa ctgtgactgt ttcagtaatg ctacagccct ttgactatga tccgaatgaa
481 aagagtaaac acaagtttat ggtacagaca atttttgctc caccaaacac ttcagatatg
541 gaagctgtgt ggaaagaggc aaaacctgat gaattaatgg attccaaatt gagatgcgta
601 tttgaaatgc ccaatgaaaa tgataaattg aatgatatgg aacctagcaa agctgttcca
661 ctgaatgcat ctaagcaaga tggacctatg ccaaaaccac acagtgtttc acttaatgat
721 accgaaacaa ggaaactaat ggaagagtgt aaaagacttc agggagaaat gatgaagcta
781 tcagaagaaa atcggcacct gagagatgaa ggtttaaggc tcagaaaggt agcacattcg
841 gataaacctg gatcaacctc aactgcatcc ttcagagata atgtcaccag tcctcttcct
901 tcacttcttg ttgtaattgc agccattttc attggattct ttctagggaa attcatcttg
961 tagagtgaag catgcagagt gctgtttctt tttttttttt tctcttgacc agaaaaagat
1021 ttgtttacct accatttcat tggtagtatg gcccacggtg accatttttt tgtgtgtaca
1081 gcgtcatata ggctttgcct ttaatgatct cttacggtta gaaaacacaa taaaaacaaa
1141 ctgttcggct actggacagg ttgtatatta ccagatcatc actagcagat gtcagttgca
1201 cattgagtcc tttatgaaat tcataaataa agaattgttc tttctttgtg gttttaataa
1261 gagttcaaga attgttcaga gtcttgtaaa tgttatttta ataatccctt taaattttat
1321 ctgttgctgt tacctcttga aatatgattt atttagattg ctaatcccac tcattcagga
1381 aatgccaaga ggtattcctt ggggaaatgg tgcctcttac agtgtaaatt tttcctcctt
1441 tacctttgct aatatcatgg cagaattttt cttatccctt gtgaggcagt tgttgactga
1501 gtttttcatc cttacaatcc tgtcccatgg tatttaacat aaaaaaaaat aaaactgtta
1561 acagattctt gctcgataaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
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