LOCUS BC002959 1953 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens APEX nuclease (apurinic/apyrimidinic endonuclease) 2, mRNA (cDNA clone MGC:1419 IMAGE:3537317), complete cds. ACCESSION BC002959 VERSION BC002959.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1953) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1953) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (06-FEB-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 8 Row: b Column: 17 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 18375506. FEATURES Location/Qualifiers source 1..1953 /db_xref="H-InvDB:HIT000031317" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:1419 IMAGE:3537317" /tissue_type="Lung, small cell carcinoma" /clone_lib="NIH_MGC_7" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1953 /gene="APEX2" /gene_synonym="APE2" /gene_synonym="APEXL2" /gene_synonym="XTH2" /db_xref="GeneID:27301" /db_xref="HGNC:HGNC:17889" CDS 39..1595 /gene="APEX2" /gene_synonym="APE2" /gene_synonym="APEXL2" /gene_synonym="XTH2" /codon_start=1 /product="APEX nuclease (apurinic/apyrimidinic endonuclease) 2" /protein_id="AAH02959.1" /db_xref="GeneID:27301" /db_xref="HGNC:HGNC:17889" /translation="MLRVVSWNINGIRRPLQGVANQEPSNCAAVAVGRILDELDADIV CLQETKVTRDALTEPLAIVEGYNSYFSFSRNRSGYSGVATFCKDNATPVAAEEGLSGL FATQNGDVGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHA DPGRPERLVFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEE DPGRKWMDSLLSNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRL DYVLGDRTLVIDTFQASFLLPEVMGSDHCPVGAVLSVSSVPAKQCPPLCTRFLPEFAG TQLKILRFLVPLEQSPVLEQSTLQHNNQTRVQTCQNKAQVRSTRPQPSQVGSSRGQKN LKSYFQPSPSCPQASPDIELPSLPLMSALMTPKTPEEKAVAKVVKGQAKTSEAKDEKE LRTSFWKSVLAGPLRTPLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSR CNFFLWSRPS" BASE COUNT 426 a 574 c 514 g 439 t ORIGIN 1 aggttggcgc gggctgggag gtgttccagc cctttaagat gttgcgcgtg gtgagctgga 61 acatcaatgg gattcggaga cccctgcaag gggtggcaaa tcaggaaccc agcaactgtg 121 ccgccgtggc cgtggggcgc attttggacg agctggatgc ggatatcgtc tgtctccagg 181 aaaccaaagt gaccagggat gcactgacag agcccctggc tatcgttgag ggttataact 241 cctatttcag cttcagccgc aaccgtagcg gctattctgg tgtagccacc ttctgtaagg 301 acaatgctac cccagtggct gctgaagaag gcctgagtgg cctgtttgcc acccagaatg 361 gggatgttgg ttgctatgga aacatggatg agtttaccca agaggaactc cgggctctgg 421 atagtgaggg cagggccctc ctcacacagc ataagatccg cacatgggaa ggtaaggaga 481 agaccttgac cctaatcaac gtgtactgcc cccatgcgga ccctgggagg cctgagcggc 541 tagtctttaa gatgcgcttc tatcgtttgc tgcaaatccg agcagaagcc ctcctggcgg 601 caggcagcca tgtgatcatt ctgggtgacc tgaatacagc ccaccgcccc attgaccact 661 gggatgcagt caacctggaa tgctttgaag aggacccagg gcgcaagtgg atggacagct 721 tgctcagtaa cttggggtgc cagtctgcct ctcatgtagg gcccttcatc gatagctacc 781 gctgcttcca accaaagcag gagggggcct tcacctgctg gtcagcagtc actggcgccc 841 gccatctcaa ctatggctcc cggcttgact atgtgctggg ggacaggacc ctggtcatag 901 acacctttca ggcctctttc ctgctgcctg aggtgatggg ctctgaccac tgccctgtgg 961 gtgcagtctt gagtgtgtcc tctgtgcctg caaaacagtg cccacctctg tgcacccgct 1021 tcctccctga gtttgcaggc acccagctca agatccttcg cttcctagtt cctctcgaac 1081 aaagtcctgt gttggagcag tcgacgctgc agcacaacaa tcaaacccgg gtacagacat 1141 gccaaaacaa agcccaagtg cgctcaacca ggcctcagcc cagtcaggtt ggctctagca 1201 gaggccagaa aaacctgaag agctactttc agccctcccc tagctgtccc caagcctctc 1261 ctgacataga gctgcctagc ctaccactga tgagcgccct catgaccccg aagactccag 1321 aagagaaggc agtggccaaa gtggtgaagg ggcaggccaa gacttcagaa gccaaagatg 1381 agaaggagtt acggacctca ttctggaagt ctgtgctggc ggggcccttg cgcacacccc 1441 tctgtggggg ccacagggag ccatgtgtga tgcgtactgt gaagaagcca ggacccaact 1501 tgggccgccg cttctacatg tgtgccaggc cccggggtcc tcccactgac ccctcctccc 1561 ggtgcaactt cttcctctgg agcaggccca gctgaaccaa tggaggcctg gggacatctg 1621 gcatggtcac ccctgcacat gatctgaggc cagctcccct tccctgagct gcctcctgct 1681 tctccctcaa agtctcctac ccttctcttc ctcttttaag ccctctcttc ctcgctttcc 1741 ttcctaccta gctccttgtt ggtgagcttc ttgtgcctta atcctgtgac ccagcccctt 1801 acaccacttt ccaccttcct gtccgaagta cacggacact agctgcccca ggaagttgtg 1861 tgattttaaa tcacttctgt ctttgctgga aagtgtattt gtgcataaat aaagtctgtg 1921 tatttgtttc aaaaaaaaaa aaaaaaaaaa aaa //