LOCUS BC002909 2488 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens chordin-like 1, mRNA (cDNA clone MGC:11264
IMAGE:3942645), complete cds.
ACCESSION BC002909
VERSION BC002909.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2488)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2488)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC002909.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 15 Row: o Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34147714.
FEATURES Location/Qualifiers
source 1..2488
/db_xref="H-InvDB:HIT000031283"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:11264 IMAGE:3942645"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2488
/gene="CHRDL1"
/gene_synonym="CHL"
/gene_synonym="dA141H5.1"
/gene_synonym="NRLN1"
/gene_synonym="VOPT"
/db_xref="GeneID:91851"
/db_xref="HGNC:HGNC:29861"
/db_xref="MIM:300350"
CDS 115..1485
/gene="CHRDL1"
/gene_synonym="CHL"
/gene_synonym="dA141H5.1"
/gene_synonym="NRLN1"
/gene_synonym="VOPT"
/codon_start=1
/product="chordin-like 1"
/protein_id="AAH02909.2"
/db_xref="GeneID:91851"
/db_xref="HGNC:HGNC:29861"
/db_xref="MIM:300350"
/translation="MRKKWKMGGMKYIFSLLFFLLLEGGKTEQVKHSETYCMFQDKKY
RVGERWHPYLEPYGLVYCVNCICSENGNVLCSRVRCPNVHCLSPVHIPHLCCPRCPDS
LPPVNNKVTSKSCEYNGTTYQHGELFVAEGLFQNRQPNQCTQCSCSEGNVYCGLKTCP
KLTCAFPVSVPDSCCRVCRGDGELSWEHSDGDIFRQPANREARHSYHRSHYDPPPSRQ
AGGLSRFPGARSHRGALMDSQQASGTIVQIVINNKHKHGQVCVSNGKTYSHGESWHPN
LRAFGIVECVLCTCNVTKQECKKIHCPNRYPCKYPQKIDGKCCKVCPGKKAKELPGQS
FDNKGYFCGEETMPVYESVFMEDGETTRKIALETERPPQVEVHVWTIRKGILQHFHIE
KISKRMFEELPHFKLVTRTTLSQWKIFTEGEAQISQMCSSRVCRTELEDLVKVLYLER
SEKGHC"
BASE COUNT 746 a 569 c 540 g 633 t
ORIGIN
1 gacggagaag gccagtgccc aggttagtga gcagtgcccg gcgcccgctt ccctcacctc
61 cttttccagc ctttgcacag cttgaaggtt ctgtcacctt ttgcagtggt ccaaatgaga
121 aaaaagtgga aaatgggagg catgaaatac atcttttcgt tgttgttctt tcttttgcta
181 gaaggaggca aaacagagca agtaaaacat tcagagacat attgcatgtt tcaagacaag
241 aagtacagag tgggtgagag atggcatcct tacctggaac cttatgggtt ggtttactgc
301 gtgaactgca tctgctcaga gaatgggaat gtgctttgca gccgagtcag atgtccaaat
361 gttcattgcc tttctcctgt gcatattcct catctgtgct gccctcgctg cccagactcc
421 ttacccccag tgaacaataa ggtgaccagc aagtcttgcg agtacaatgg gacaacttac
481 caacatggag agctgttcgt agctgaaggg ctctttcaga atcggcaacc caatcaatgc
541 acccagtgca gctgttcgga gggaaacgtg tattgtggtc tcaagacttg ccccaaatta
601 acctgtgcct tcccagtctc tgttccagat tcctgctgcc gggtatgcag aggagatgga
661 gaactgtcat gggaacattc tgatggtgat atcttccggc aacctgccaa cagagaagca
721 agacattctt accaccgctc tcactatgat cctccaccaa gccgacaggc tggaggtctg
781 tcccgctttc ctggggccag aagtcaccgg ggagctctta tggattccca gcaagcatca
841 ggaaccattg tgcaaattgt catcaataac aaacacaagc atggacaagt gtgtgtttcc
901 aatggaaaga cctattctca tggcgagtcc tggcacccaa acctccgggc atttggcatt
961 gtggagtgtg tgctatgtac ttgtaatgtc accaagcaag agtgtaagaa aatccactgc
1021 cccaatcgat acccctgcaa gtatcctcaa aaaatagacg gaaaatgctg caaggtgtgt
1081 ccaggtaaaa aagcaaaaga acttccaggc caaagctttg acaataaagg ctacttctgc
1141 ggggaagaaa cgatgcctgt gtatgagtct gtattcatgg aggatgggga gacaaccaga
1201 aaaatagcac tggagactga gagaccacct caggtagagg tccacgtttg gactattcga
1261 aagggcattc tccagcactt ccatattgag aagatctcca agaggatgtt tgaggagctt
1321 cctcacttca agctggtgac cagaacaacc ctgagccagt ggaagatctt caccgaagga
1381 gaagctcaga tcagccagat gtgttcaagt cgtgtatgca gaacagagct tgaagattta
1441 gtcaaggttt tgtacctgga gagatctgaa aagggccact gttaggcaag acagacagta
1501 ttggataggg taaagcaaga aaactcaagc tgcagctgga ctgcaggctt attttgctta
1561 agtcaacagt gccctaaaac tccaaactca aatgcagtca attattcacg ccatgcacag
1621 cataatttgc tcctttgtgt ggagtggtgt gtcagccctt gaacatctcc tccaaagaga
1681 ctagaagagt cttaaattat atgtgggagg aggagggata gaacatcaca acactgctct
1741 agtttcttgg agaatcacat ttctttacag gttaaagaca aacaagaccc cagggttttt
1801 atctagaaag ttattcaagt gaaagaaaga gaagggaatt gcttagtagg agttctgcag
1861 tatagaacaa ttacttgtat gaaattatac ctttgaattt tagaatgtca tgtgttcttt
1921 taaaaaaatt agctccccat cctccctcct cactccctcc ctccctcctt ctctctctct
1981 ctctctctcc ctccctctct cacagacaca cacacacaca cacacacaca cacacacacg
2041 cacgtccaca ctcacattaa acgaaagctt tatttgaagc aaagctagcc aagattctac
2101 gttacttttc ccttgactgg atcccaagta gcttggaagt ttttgtgccc aggagagtaa
2161 ataactgtga acaagaggct ctgcccttag gtctttgtgg ctgtttaagt caccaacaat
2221 agagtcaggg taaagaataa aaacactttc atagcctcat tcattcactt agaagtggta
2281 ataatttttc cctaatgata ccacttttct tttccccctg tacctatggg acttccagaa
2341 agaagttaaa ttgagtaaaa tcatcagaaa ctgaatccat gtaagaaaaa ataattgttg
2401 aagaaagaag ttgatagaat tcaaaaaggc catctttttg ctttcacatc aataaaattt
2461 accaagtaat aaaaaaaaaa aaaaaaaa
//