LOCUS BC002818 1430 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens synovial sarcoma, X breakpoint 2, mRNA (cDNA clone MGC:3884 IMAGE:3636268), complete cds. ACCESSION BC002818 VERSION BC002818.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1430) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1430) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 19, 2003 this sequence version replaced BC002818.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 12 Row: f Column: 10 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 28559016. FEATURES Location/Qualifiers source 1..1430 /db_xref="H-InvDB:HIT000031212_04" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:3884 IMAGE:3636268" /tissue_type="Placenta, choriocarcinoma" /clone_lib="NIH_MGC_21" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1430 /gene="SSX2" /gene_synonym="HD21" /gene_synonym="HOM-MEL-40" /gene_synonym="MGC15364" /gene_synonym="MGC3884" /db_xref="GeneID:6757" /db_xref="HGNC:HGNC:11336" /db_xref="MIM:300192" CDS 71..742 /gene="SSX2" /gene_synonym="HD21" /gene_synonym="HOM-MEL-40" /gene_synonym="MGC15364" /gene_synonym="MGC3884" /codon_start=1 /product="synovial sarcoma, X breakpoint 2" /protein_id="AAH02818.1" /db_xref="GeneID:6757" /db_xref="HGNC:HGNC:11336" /db_xref="MIM:300192" /translation="MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASE KIFYVYMKRKYEAMTKLGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFG RLQGISPKIMPKKPAEEGNDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGNREA QEKEERRGTAHRWSSQNTHNIGRFSLSTSMGAVHGTPKTITHNRDPKGGNMPGPTDCV RENSW" BASE COUNT 435 a 353 c 317 g 325 t ORIGIN 1 ctcagagtac gcacggtctg attttctctt tggattcttc caaaatcaga gtcagactgc 61 tcccggtgcc atgaacggag acgacgcctt tgcaaggaga cccacggttg gtgctcaaat 121 accagagaag atccaaaagg ccttcgatga tattgccaaa tacttctcta aggaagagtg 181 ggaaaagatg aaagcctcgg agaaaatctt ctatgtgtat atgaagagaa agtatgaggc 241 tatgactaaa ctaggtttca aggccaccct cccacctttc atgtgtaata aacgggccga 301 agacttccag gggaatgatt tggataatga ccctaaccgt gggaatcagg ttgaacgtcc 361 tcagatgact ttcggcaggc tccagggaat ctccccgaag atcatgccca agaagccagc 421 agaggaagga aatgattcgg aggaagtgcc agaagcatct ggcccacaaa atgatgggaa 481 agagctgtgc cccccgggaa aaccaactac ctctgagaag attcacgaga gatctggaaa 541 tagggaggcc caagaaaagg aagagagacg cggaacagct catcggtgga gcagtcagaa 601 cacacacaac attggtcgat tcagtttgtc aacttctatg ggtgcagttc atggtacccc 661 caaaacaatt acacacaaca gggacccaaa aggggggaac atgcctggac ccacagactg 721 cgtgagagaa aacagctggt gatttatgaa gagatcagcg accctgagga agatgacgag 781 taactcccct cagggatacg acacatgccc atgatgagaa gcagaacgtg gtgacctttc 841 acgaacatgg gcatggctgc ggacccctcg tcatcaggtg catagcaagt gaaagcaagt 901 gttcacaaca gtgaaaagtt gagcgtcatt tttcttagtg tgccaagagt tcgatgttag 961 cgtttacgtt gtattttctt acactgtgtc attctgttag atactaacat tttcattgat 1021 gagcaagaca tacttaatgc atattttggt ttgtgtatcc atgcacctac cttagaaaac 1081 aagtattgtc ggttacctct gcatggaaca gcattaccct cctctctccc cagatgtgac 1141 tactgagggc agttctgagt gtttaatttc agattttttc ctctgcattt acacacacac 1201 gcacacaaac cacaccacac acacacacac acacacacac acacacacac acacacccac 1261 caagtaccag tataagcatc tgccatctgc ttttcccatt gccatgcgtc ctggtcaagc 1321 tcccctcact ctgtttcctg gtcagcatgt actcccctca tccgattccc ctgtagcagt 1381 cactgacagt taataaacct ttgcaaacgt tcaaaaaaaa aaaaaaaaaa //