LOCUS       BC002693                2040 bp    mRNA    linear   HUM 04-NOV-2003
DEFINITION  Homo sapiens spermatid perinuclear RNA binding protein, mRNA (cDNA
            clone IMAGE:3606572), partial cds.
ACCESSION   BC002693
VERSION     BC002693.2
KEYWORDS    .
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 2040)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 2040)
  AUTHORS   Strausberg,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-FEB-2001) National Institutes of Health, Mammalian
            Gene Collection (MGC), Cancer Genomics Office, National Cancer
            Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
            USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     On Oct 31, 2003 this sequence version replaced BC002693.1.
            Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: ATCC
            cDNA Library Preparation: Rubin Laboratory
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: National Institutes of Health Intramural
            Sequencing Center (NISC),
            Gaithersburg, Maryland;
            Web site: http://www.nisc.nih.gov/
            Contact: nisc_mgc@nhgri.nih.gov
            Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
            Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
            Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
            Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
            Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
            McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
            Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
            Young,A., Zhang,L.-H. and Green,E.D.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAL Plate: 12 Row: o Column: 5
            This clone was selected for full length sequencing because it
            passed the following selection criteria: matched mRNA gi: 21361744.
FEATURES             Location/Qualifiers
     source          1..2040
                     /db_xref="H-InvDB:HIT000031103"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="IMAGE:3606572"
                     /tissue_type="Uterus, endometrium adenocarcinoma"
                     /clone_lib="NIH_MGC_44"
                     /lab_host="DH10B-R"
                     /note="Vector: pOTB7"
     gene            <1..2040
                     /gene="STRBP"
                     /gene_synonym="DKFZp434N214"
                     /gene_synonym="FLJ11307"
                     /gene_synonym="FLJ14223"
                     /gene_synonym="FLJ14984"
                     /gene_synonym="MGC21529"
                     /gene_synonym="MGC3405"
                     /gene_synonym="SPNR"
                     /db_xref="GeneID:55342"
     CDS             <1..1848
                     /gene="STRBP"
                     /gene_synonym="DKFZp434N214"
                     /gene_synonym="FLJ11307"
                     /gene_synonym="FLJ14223"
                     /gene_synonym="FLJ14984"
                     /gene_synonym="MGC21529"
                     /gene_synonym="MGC3405"
                     /gene_synonym="SPNR"
                     /codon_start=1
                     /product="STRBP protein"
                     /protein_id="AAH02693.2"
                     /db_xref="GeneID:55342"
                     /translation="TEGETEVKKDEAGENYSKDQGGRTLCGVMRIGLVAKGLLIKDDM
                     DLELVLMCKDKPTETLLNTVKDNLPIQIQKLTEEKYQVEQCVNEASIIIRNTKEPTLT
                     LKVILTSPLIRDELEKKDGENVSMKDPPDLLDRQKCLNALASLRHAKWFQARANGLKS
                     CVIVLRILRDLCNRVPTWAPLKGWPLELICEKSIGTCNRPLGAGEALRRVMECLASGI
                     LLPGGPGLHDPCERDPTDALSYMTIQQKEDITHSAQHALRLSAFGQIYKVLEMDPLPS
                     SKPFQKYSWSVTDKEGAGSSALKRPFEDGLGDDKDPNKKMKRNLRKILDSKAIDLMNA
                     LMRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTYEASGPSKKTAKLHVAVKVLQ
                     AMGYPTGFDADIECMSSDEKSDNESKNETVSSNSSNNTGNSTTETSSTLEVRTQGPIL
                     TASGKNPVMELNEKRRGLKYELISETGGSHDKRFVMEVEVDGQKFRGAGPNKKVAKAS
                     AALAALEKLFSGPNAANNKKKKIIPQAKGVVNTAVSAAVQAVRGRGRGTLTRGAFVGA
                     TAAPGYIAPGYGTPYGYSTAAPAYGLPKRMVLLPVMKFPTYPVPHYSFF"
     misc_feature    70..831
                     /gene="STRBP"
                     /gene_synonym="DKFZp434N214"
                     /gene_synonym="FLJ11307"
                     /gene_synonym="FLJ14223"
                     /gene_synonym="FLJ14984"
                     /gene_synonym="MGC21529"
                     /gene_synonym="MGC3405"
                     /gene_synonym="SPNR"
                     /note="DZF; Region: domain in DSRM or ZnF_C2H2 domain
                     containing proteins"
                     /db_xref="CDD:smart00572"
     misc_feature    994..1182
                     /gene="STRBP"
                     /gene_synonym="DKFZp434N214"
                     /gene_synonym="FLJ11307"
                     /gene_synonym="FLJ14223"
                     /gene_synonym="FLJ14984"
                     /gene_synonym="MGC21529"
                     /gene_synonym="MGC3405"
                     /gene_synonym="SPNR"
                     /note="dsrm; Region: Double-stranded RNA binding motif.
                     Sequences gathered for seed by HMM_iterative_training
                     Putative motif shared by proteins that bind to dsRNA. At
                     least some DSRM proteins seem to bind to specific RNA
                     targets. Exemplified by Staufen, which is involved in
                     localisation of at least five different mRNAs in the early
                     Drosophila embryo. Also by interferon-induced protein
                     kinase in humans, which is part of the cellular response
                     to dsRNA"
                     /db_xref="CDD:pfam00035"
     misc_feature    1363..1503
                     /gene="STRBP"
                     /gene_synonym="DKFZp434N214"
                     /gene_synonym="FLJ11307"
                     /gene_synonym="FLJ14223"
                     /gene_synonym="FLJ14984"
                     /gene_synonym="MGC21529"
                     /gene_synonym="MGC3405"
                     /gene_synonym="SPNR"
                     /note="DSRM; Region: Double-stranded RNA binding motif"
                     /db_xref="CDD:smart00358"
BASE COUNT          670 a          400 c          471 g          499 t
ORIGIN      
        1 acagagggtg agacagaagt gaagaaagat gaggccggag aaaactattc caaggatcaa
       61 ggtggtcgga cattgtgtgg tgtaatgagg attggcctgg ttgcaaaagg cttgctgatt
      121 aaagatgata tggacttgga gctggtttta atgtgcaaag acaaacccac agagaccctg
      181 ttaaatacag tcaaagataa tcttcctatt cagattcaga aactcacaga agagaaatat
      241 caagtggaac aatgtgtaaa tgaggcatct attataattc ggaatacaaa agagcccacg
      301 ctaactttga aggtgatact tacctcacct ctaattaggg acgaattgga gaagaaggat
      361 ggagaaaatg tttcgatgaa agatcctccg gacttattgg acaggcagaa atgcctgaac
      421 gccttggcgt ctcttcgaca tgccaaatgg tttcaggcaa gggcaaatgg attaaaatca
      481 tgtgtaattg tcctccgcat tctgcgtgat ttgtgcaaca gagtccccac atgggcacca
      541 ttgaaaggat ggccactaga acttatatgt gaaaagtcta taggtacttg taatagacct
      601 ttgggcgctg gggaggcctt gagacgagta atggagtgtt tggcatctgg aatactactt
      661 cctgggggtc ctggtcttca tgatccttgt gagcgagacc caacagatgc tctgagctat
      721 atgaccatcc agcaaaaaga agatattacc cacagtgcac agcatgcact cagactatca
      781 gcctttggcc agatttacaa agtgctggag atggaccccc ttccatctag taagcctttt
      841 cagaagtatt cctggtcagt tactgataaa gaaggtgctg ggtcttcagc tctaaagagg
      901 ccatttgaag atggattagg ggatgataaa gaccccaaca agaagatgaa acgaaactta
      961 aggaaaattc tggatagtaa agcaatagac cttatgaatg cactaatgag gctaaatcag
     1021 atcaggcctg ggcttcagta taagctccta tctcagtctg gccccgttca tgccccagtc
     1081 ttcacaatgt ctgtagatgt ggatggcaca acatatgaag cctcaggacc atccaagaaa
     1141 acagcaaaac ttcacgtagc ggtgaaggta ttgcaggcaa tgggatatcc aacaggcttt
     1201 gatgcagata ttgaatgtat gagttccgat gaaaaatcag ataatgaaag taaaaatgaa
     1261 acagtgtctt caaactcaag caataatact ggaaattcta caactgaaac ctccagtacc
     1321 ttagaggtaa gaactcaggg ccctatcctc acagcaagtg gcaaaaaccc tgtaatggag
     1381 ctcaatgaaa aaagaagagg tctcaagtat gaactcatct cagagactgg tggaagccat
     1441 gacaagcgct ttgtaatgga ggtagaagta gatggacaga aattcagagg cgcaggtcca
     1501 aataagaaag tggcaaaggc gagtgcagct ttagctgcct tggagaaact gttttctgga
     1561 cccaatgcgg caaataataa gaaaaagaag attatccctc aggcaaaggg cgttgtgaat
     1621 acagctgtgt ctgcagcagt ccaagctgtt cggggcagag gaagaggaac tctaacaagg
     1681 ggagcttttg ttggggcgac agctgctcct ggctacatag ctccaggcta tggaacacca
     1741 tatggttaca gcacagctgc ccctgcctat ggtttaccca agagaatggt tctgttaccc
     1801 gttatgaaat ttccaacata tcctgttccc cactactcat tcttttagca aatgacagaa
     1861 gctaattcct attgaacaac aatacagtac aacacagaat gttagagaaa aagccttttt
     1921 atcctgcttt ctttgaacac atacttgatc aaaattattt gtaaagaaca tctttcctac
     1981 tttttgattt taacaaatgc aaatttagtt ctctaaaact tgaaaaaaaa aaaaaaaaaa
//