LOCUS BC002610 1938 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens sorting nexin 17, mRNA (cDNA clone MGC:2988
IMAGE:3143104), complete cds.
ACCESSION BC002610
VERSION BC002610.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1938)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1938)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis M. Staudt, M.D., Ph.D.
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 4 Row: n Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23238249.
FEATURES Location/Qualifiers
source 1..1938
/db_xref="H-InvDB:HIT000031033"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:2988 IMAGE:3143104"
/tissue_type="Lymph, Burkitt lymphoma"
/clone_lib="NIH_MGC_8"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1938
/gene="SNX17"
/gene_synonym="KIAA0064"
/db_xref="GeneID:9784"
/db_xref="HGNC:HGNC:14979"
/db_xref="MIM:605963"
CDS 99..1511
/gene="SNX17"
/gene_synonym="KIAA0064"
/codon_start=1
/product="sorting nexin 17"
/protein_id="AAH02610.1"
/db_xref="GeneID:9784"
/db_xref="HGNC:HGNC:14979"
/db_xref="MIM:605963"
/translation="MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLH
EQLRKEYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFL
RRAQQETQQVPTEEVSLEVLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYF
SLFLVREKEDGAFSFVRKLQEFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENR
VGLNLLYAQTVSDIERGWILVTKEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDA
CVADFPEKDCPVVVSAGNSELSLQLRLPGQQLREGSFRVTRMRCWRVTSSVPLPSGST
SSPGRGRGEVRLELAFEYLMSKDRLQWVTITSPQAIMMSICLQSMVDELMVKKSGGSI
RKMLRRRVGGTLRRSDSQQAVKSPPLLESPDATRESMVKLSSKLSAVSLRGIGSPSTD
ASASDVHGNFAFEGIGDEDL"
BASE COUNT 421 a 514 c 565 g 438 t
ORIGIN
1 gtgaggctgc ggggactcgc tgagcagcgg agggggagcg tgcagagccg ctgcggccct
61 cacagtccgg agcccggccg tgccgtgccg tagggaacat gcacttttcc attcccgaaa
121 ccgagtcccg cagcggggac agcggcggct ccgcctacgt ggcctataac attcacgtga
181 atggagtcct gcactgtcgg gtgcgctaca gccagctcct ggggctgcac gagcagcttc
241 ggaaggagta tggggccaat gtgcttcctg cattcccccc aaagaagctt ttctctctga
301 ctcctgctga ggtagaacag aggagagagc agttagagaa gtacatgcaa gctgttcggc
361 aagacccatt gcttgggagc agcgagactt tcaacagttt cctgcgtcgg gcacaacagg
421 agacacagca ggtccccaca gaggaagtgt ccttggaagt gctgctcagc aacgggcaga
481 aagttctggt caacgtgcta acttcagatc agactgagga tgtcctggag gctgtagctg
541 caaagctgga tcttccagat gacttgattg gatactttag tctattctta gttcgagaaa
601 aagaggatgg agccttttct tttgtacgga agttgcaaga gtttgagctg ccttatgtgt
661 ctgtcaccag ccttcggagt caagagtata agattgtgct aaggaagagt tattgggact
721 ctgcctatga tgacgatgtc atggagaacc gggttggcct gaacctgctt tatgctcaga
781 cggtatcaga tattgagcgt gggtggatct tggtcaccaa ggaacagcac cggcaactca
841 aatctctgca agagaaagtc tccaagaagg agttcctgag actggcccag acgctgcggc
901 actatggcta cttgcgcttt gatgcctgtg tggctgactt cccagaaaag gactgtcctg
961 tggtggtgag cgcgggcaac agtgagctca gcctgcagct ccgcctgcct ggccagcaac
1021 tccgagaagg ctccttccgg gtcacccgca tgcgatgctg gcgggtcacc tcctctgtac
1081 cattgcccag tggaagcacg agcagcccag gccggggccg gggtgaggtg cgcctggaac
1141 tggcttttga atacctcatg agcaaggacc ggctacagtg ggtcaccatc actagccccc
1201 aggctatcat gatgagcatc tgcttgcagt ccatggttga tgaactgatg gtgaagaaat
1261 ctggcggcag tatcaggaag atgctgcgcc ggcgggtggg gggtactctg agacgctcag
1321 acagccagca agcagtgaag tccccaccac tgcttgagtc acctgatgcc acccgggagt
1381 ctatggtcaa actctcaagt aagctgagtg ccgtgagctt gcggggaatt ggcagtccca
1441 gcacagatgc cagtgccagt gatgtccacg gcaatttcgc cttcgagggc attggagatg
1501 aggatctgta atctccactg cttggatgtc tgccctctac cccagaggaa tttacagaaa
1561 cttgccctgt gcctgtgtcc cccatgctag gggcggaggg gtcttttcct tcttctttcc
1621 tacctacccc ttttctcttg gccaggggcc tcgtatccta cctttccttg tcccctgggc
1681 tggctgcaca gaggattgcc ccttctcttt tcagagctgg ccctcgatgc caaattagca
1741 tttagtattt tgcacaaagt ctaagggacc atggctgcct gccttgggga ggaaccatag
1801 ctccctctgg gccgcttctg gcctcttgga gccatgggcc aaaggccaag gggatgggca
1861 gaggtctgtg tttggtctgg cccagttccc catcattaaa ctcagcctga ctgctgccta
1921 aaaaaaaaaa aaaaaaaa
//