LOCUS BC002587 2938 bp mRNA linear HUM 18-AUG-2006
DEFINITION Homo sapiens Smith-Magenis syndrome chromosome region, candidate
7-like, mRNA (cDNA clone IMAGE:3160567), partial cds.
ACCESSION BC002587
VERSION BC002587.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2938)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2938)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC002587.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 4 Row: f Column: 18.
FEATURES Location/Qualifiers
source 1..2938
/db_xref="H-InvDB:HIT000031015"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3160567"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..2938
/gene="SMCR7L"
/gene_synonym="dJ1104E15.3"
/gene_synonym="FLJ20232"
/gene_synonym="HSU79252"
/db_xref="GeneID:54471"
/db_xref="HGNC:HGNC:25979"
CDS <1..1081
/gene="SMCR7L"
/gene_synonym="dJ1104E15.3"
/gene_synonym="FLJ20232"
/gene_synonym="HSU79252"
/codon_start=2
/product="SMCR7L protein"
/protein_id="AAH02587.2"
/db_xref="GeneID:54471"
/db_xref="HGNC:HGNC:25979"
/translation="FDTDTFCPPRPKPVARKGQVDLKKSRLRMSLQEKLLTYYRNRAA
IPAGEQARAKQAAVDICAELRSFLRAKLPDMPLRDMYLSGSLYDDLQVVTADHIQLIV
PLVLEQNLWSCIPGEDTIMNVPGFFLVRRENPEYFPRGSSYWDRCVVGGYLSPKTVAD
TFEKVVAGSINWPAIGSLLDYVIRPAPPPEALTLEVQYERDKHLFIDFLPSVTLGDTV
LVAKPHRLAQYDNLWRLSLRPAETARLRALDQADSGCRSLCLKILKAICKSTPALGHL
TASQLTNVILHLAQEEADWSPDMLADRFLQALRGLISYLEAGVLPSALNPKVNLFAEL
TPEEIDELGYTLYCSLSEPEVLLQT"
BASE COUNT 646 a 747 c 747 g 798 t
ORIGIN
1 cttcgacaca gatacattct gcccgccccg gcccaagcca gtggccagga agggccaggt
61 agacttgaag aagtcacgac tccgcatgtc cctgcaggag aaacttctta cttactaccg
121 gaaccgggca gccatccctg ctggagagca ggctcgggcc aagcaagctg ctgtggacat
181 atgtgccgag ctccggagct tcctgcgggc caagttgcct gacatgccgc ttcgggacat
241 gtacttgagt ggcagcctct acgatgacct gcaggtggtg acagctgacc acatccaact
301 cattgtgccc cttgtgctgg agcagaacct gtggtcatgt attcctggtg aagacaccat
361 catgaatgtc cctggcttct tcctggtgcg tcgtgagaat ccagagtact ttcctcgtgg
421 gagcagttac tgggaccgct gtgtagtagg gggctacctc tctccaaaga cagtcgcaga
481 tacatttgag aaggtagtgg ctggctccat caattggcca gccatagggt ccctcttgga
541 ctatgtgatc cgcccggccc cacccccaga agccctcaca ctggaggtgc agtatgagcg
601 tgacaaacat ctcttcattg acttcctgcc atcagtgacc ctcggtgaca cagtcttggt
661 ggccaaacca caccggctag cccagtatga caacctgtgg cggctgagcc tgcgtcccgc
721 ggagacggca cgcctgcggg ctctggacca ggctgactcg ggctgccgat ctctgtgcct
781 caagatcctc aaggccatat gcaagtccac cccggctctg ggccacctca ctgccagcca
841 gctaaccaat gtcatcctcc acttggccca ggaggaggct gactggtctc cggatatgct
901 ggccgaccgt ttcctgcagg ccttgagggg acttatcagc tacttagagg ctggagtcct
961 gcccagtgcc ctaaacccca aggtgaactt atttgcagag ctcacccctg aagaaataga
1021 cgaattagga tacactctgt attgctcatt gtctgagcca gaggtgctgc tgcagacgta
1081 gggcaggtga aggccaaagc gggtgttggt ggtcaggccc tggattctcc gttagataca
1141 cttggctacc tagttggtgc ctcacagggt tcctgctgcc tggtgtcttg ctgatcatca
1201 ccctggtcac ttcatgctga ttagaatgac atctctttcg tctcctattt tgttacccaa
1261 ctcttcctat ttttgttacc aatcactgtg ctctctgccg ccccctggct ccaggctaat
1321 ttttctggaa tgaattgaga aggtggcgtg ctggcctgag ctgatggacc acttggtgtt
1381 ttgcgttttg gcccatgttt gctgcctcta tctggtctgc cttgcccgtt tgcctgttcc
1441 tattcagtgt cttttctatt ttttcctctc tcgttcatgc cttctgtttt gctcttgtcc
1501 ctggagcata tctgcctaat taagatgttg ccttttagtt gaatgccact gaagagctgt
1561 gatagcatgt ttcaaagctg aactctacag agcgagtgct gagacagtat ttagggtttc
1621 tgggagtgag gctggtagaa gagttggcct ttgaccacgg ttcctggagt agaagtccat
1681 cctcccccca acctcctgac ccattcataa atgctgagaa tgtctctcat gggaacactg
1741 ttaatgaccc acacaggata agctgaatgc aaagttattt gcaggttgaa tttcttggtg
1801 gctattagca gaagtgcaga gtagggaacc agagctggtt aagggcctag tgaagggttt
1861 gtgtgcccag tgtctgctcg tcatctgtgg ctgcaggggt cagacagaca aggatgggga
1921 ctgccagggc accacttcat catgaatgct ggttttcaca ccttttcctt attttattgc
1981 caatcaggac aaggccttga aggaacgcag ccttagacat caggtgagga tgatggaggt
2041 agacagtcga ctgaatgtca gctggaaaat ccagtcacta gttggggttt ggtggccatg
2101 ttttctaccc agacaggccc tgcttttcta ggatgtggcc ttagagcaag aacagaccca
2161 acagccagcc cttcatcctc cagcgtctgc cataggaatg tgagaggggt gtttgctgag
2221 cgctccgggc acggccagag ggcaagtgag catgcacgga cctcttcccc ctgtcctgtt
2281 tctcacccag cacctgggga gatcggtgct accaaggaag agagcacaca gataagacag
2341 aggggaggag gtgggcattt cctacattcc tccttgtttg ccgctgctga gattgcagta
2401 tttattgcaa tgtaaatgta tcctgaaggt ggggaggaat gtttaatcta ccatgtccgt
2461 gtgtcatctt ggtttgtgtt tttccctgtt tgtagcaaga ctctgatgat aattctgttt
2521 ctcatctgcc cattcagtat tttgttttcc ttccgtcaag ttgtcttatt ttttcaatga
2581 ctacctctcc atcattgagg ttctggtgaa gctctctgca gctgtctcat tccttcccaa
2641 cgatagtaac aggaaatgac tctttagcat cgatacctca acatcaattt agggtagaga
2701 ttcctgcccc tcttttgtca cagattagga aattgagaac tagggttaac cttgactata
2761 tttagaggtc tttttgcctc ttttcccctt aacaaggatt tcttatggtg gtttcagttt
2821 catttgcata aaggtattga gagggaacaa aaaacataaa gctgagaatc ttgagagagc
2881 tcatctaccc tgtctgttgg tcagactcaa atgagagtta aaaaaaaaaa aaaaaaaa
//