LOCUS BC002563 2041 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens solute carrier family 39 (zinc transporter), member 1,
mRNA (cDNA clone MGC:836 IMAGE:3138575), complete cds.
ACCESSION BC002563
VERSION BC002563.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2041)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2041)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC002563.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 4 Row: n Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34147669.
FEATURES Location/Qualifiers
source 1..2041
/db_xref="H-InvDB:HIT000030995"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:836 IMAGE:3138575"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2041
/gene="SLC39A1"
/gene_synonym="ZIP1"
/db_xref="GeneID:27173"
/db_xref="HGNC:HGNC:12876"
/db_xref="MIM:604740"
CDS 62..1036
/gene="SLC39A1"
/gene_synonym="ZIP1"
/codon_start=1
/product="solute carrier family 39 (zinc transporter),
member 1"
/protein_id="AAH02563.1"
/db_xref="GeneID:27173"
/db_xref="HGNC:HGNC:12876"
/db_xref="MIM:604740"
/translation="MGPWGEPELLVWRPEAVASEPPVPVGLEVKLGALVLLLVLTLLC
SLVPICVLRRPGANHEGSASRQKALSLVSCFAGGVFLATCLLDLLPDYLAAIDEALAA
LHVTLQFPLQEFILAMGFFLVLVMEQITLAYKEQSGPSPLEETRALLGTVNGGPQHWH
DGPGVPQASGAPATPSALRACVLVFSLALHSVFEGLAVGLQRDRARAMELCLALLLHK
GILAVSLSLRLLQSHLRAQVVAGCGILFSCMTPLGIGLGAALAESAGPLHQLAQSVLE
GMAAGTFLYITFLEILPQELASSEQRILKVILLLAGFALLTGLLFIQI"
BASE COUNT 427 a 548 c 596 g 470 t
ORIGIN
1 cggagaccat gtagtgagac cctcgcgagg tctgagagtc actggagcta ccagaagcat
61 catggggccc tggggagagc cagagctcct ggtgtggcgc cccgaggcgg tagcttcaga
121 gcctccagtg cctgtggggc tggaggtgaa gttgggggcc ctggtgctgc tgctggtgct
181 caccctcctc tgcagcctgg tgcccatctg tgtgctgcgc cggccaggag ctaaccatga
241 aggctcagct tcccgccaga aagccctgag cctagtaagc tgtttcgcgg ggggcgtctt
301 tttggccact tgtctcctgg acctgctgcc tgactacctg gctgccatag atgaggccct
361 ggcagccttg cacgtgacgc tccagttccc actgcaagag ttcatcctgg ccatgggctt
421 cttcctggtc ctggtgatgg agcagatcac actggcttac aaggagcagt cagggccgtc
481 acctctggag gaaacaaggg ctctgctggg aacagtgaat ggtgggccgc agcattggca
541 tgatgggcca ggggtcccac aggcgagtgg agccccagca accccctcag ccttgcgtgc
601 ctgtgtactg gtgttctccc tggccctcca ctccgtgttc gaggggctgg cggtagggct
661 gcagcgagac cgggctcggg ccatggagct gtgcctggct ttgctgctcc acaagggcat
721 cctggctgtc agcctgtccc tgcggctgtt gcagagccac cttagggcac aggtggtggc
781 tggctgtggg atcctcttct catgcatgac acctctaggc atcgggctgg gtgcagctct
841 ggcagagtcg gcaggacctc tgcaccagct ggcccagtct gtgctagagg gcatggcagc
901 tggcaccttt ctctatatca cctttctgga aatcctgccc caggagctgg ccagttctga
961 gcaaaggatc ctcaaggtca ttctgctcct agcaggcttt gccctgctca ctggcctgct
1021 cttcatccaa atctaggggg cttcaagaga ggggcagggg agattgatga tcaggtgccc
1081 ctgttctccc ttccctcccc cagttgtggg gaataggaag gaaaggggaa gggaaatact
1141 gaggaccaaa aagttctctg ggagctaaag atagagcctt tggggctatc tgactaatga
1201 gagggaagtg ggcagacaag aggctggccc cagtcccaag gaacaagaga tggtcaagtc
1261 gctagagaca tatcagggga cattaggatt ggggaagaca cttgactgct agaatcagag
1321 gttggacact atacataaga acaggctcac atgggaggct ggaggtgggt acccagctgc
1381 tgtggaacgg gtatggacag gtcataaacc tagagtcagt gtcctgttgg tcctagccca
1441 tttcagcacc ctgccacttg gagtggaccc ctcctactct tcttagcgcc taccctcata
1501 cctatctccc tcctcccatc tcctagggga ctggcgccaa atggtctctc cctgccaatt
1561 ttggtatctt ctctggcctc tccagtcctg cttactcctc tatttttaaa gtgccaaaca
1621 aatccccttc ctctttctca aagcacagta atgtggcact gagccctacc cagcacctca
1681 gtgaaggggg cctgcttgct ctttattttg gtcccggatc ctggggtggg gcagaaatat
1741 tttctgggct ggggtaggag gaaggttgtt gcagccatct actgctgctg taccctagga
1801 atatggggac atggacatgg tgtcccatgc ccagatgata aacactgagc tgccaaaaca
1861 tttttttaaa tacacccgag gagcccaagg gggaagggca atgcctaccc ccagcgttat
1921 ttttggggag ggagggctgt gcatagggac atattcttta gaatctattt tattaactga
1981 cctgttttgg gacctgttac ccaaataaaa gatgtttcta gaaaaaaaaa aaaaaaaaaa
2041 a
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