LOCUS BC002560 1388 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens DNA (cytosine-5-)-methyltransferase 3-like, mRNA (cDNA
clone MGC:1090 IMAGE:3138514), complete cds.
ACCESSION BC002560
VERSION BC002560.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1388)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1388)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC002560.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 4 Row: n Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 28872779.
FEATURES Location/Qualifiers
source 1..1388
/db_xref="H-InvDB:HIT000030992"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1090 IMAGE:3138514"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1388
/gene="DNMT3L"
/gene_synonym="MGC1090"
/db_xref="GeneID:29947"
/db_xref="HGNC:HGNC:2980"
/db_xref="MIM:606588"
CDS 159..1319
/gene="DNMT3L"
/gene_synonym="MGC1090"
/codon_start=1
/product="DNA (cytosine-5-)-methyltransferase 3-like"
/protein_id="AAH02560.1"
/db_xref="GeneID:29947"
/db_xref="HGNC:HGNC:2980"
/db_xref="MIM:606588"
/translation="MAAIPALDPEAEPSMDVILVGSSELSSSVSPGTGRDLIAYEVKA
NQRNIEDICICCGSLQVHTQHPLFEGGICAPCKDKFLDALFLYDDDGYQSYCSICCSG
ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSSRSGLLQRRRKW
RSQLKAFYDRESENPLEMFETVPVWRRQPVRVLSLFEDIKKELTSLGFLESGSDPGQL
KHVVDVTDTVRKDVEEWGPFDLVYGATPPLGHTCDRPPSWYLFQFHRLLQYARPKPGS
PGPFFWMFVDNLVLNKEDLDVASRFLEMEPVTIPDVHGGSLQNAVRVWSNIPAIRSRH
WALVSEEELSLLAQNKQSSKLAAKWPTKLVKNCFLPLREYFKYFSTELTSSL"
BASE COUNT 316 a 404 c 380 g 288 t
ORIGIN
1 gtgggcctgg atccttccag ctcattcttt gcctgcgccg tccctcgttc catggcccag
61 tcctccccgg ggaccctgag cctggaagcc ccggaccact ggaaccttga acccaccagc
121 tggctgtacc cggagccgtg gcagcagccc tcatccccat ggcggccatc ccagccctgg
181 acccagaggc cgagcccagc atggacgtga ttttggtggg atccagtgag ctctcaagct
241 ccgtttcacc cgggacaggc agagatctta ttgcatatga agtcaaggct aaccagcgaa
301 atatagaaga catctgcatc tgctgcggaa gtctccaggt tcacacacag caccctctgt
361 ttgagggagg gatctgcgcc ccatgtaagg acaagttcct ggatgccctc ttcctgtacg
421 acgatgacgg gtaccaatcc tactgctcca tctgctgctc cggagagacg ctgctcatct
481 gcggaaaccc tgattgcacc cgatgctact gcttcgagtg tgtggatagc ctggtcggcc
541 ccgggacctc ggggaaggtg cacgccatga gcaactgggt gtgctacctg tgcctgccgt
601 cctcccgaag cgggctgctg cagcgtcgga ggaagtggcg cagccagctc aaggccttct
661 acgaccgaga gtcggagaat ccccttgaga tgttcgaaac cgtgcctgtg tggaggagac
721 agccagtccg ggtgctgtcc ctttttgaag acatcaagaa agagctgacg agtttgggct
781 ttttggaaag tggttctgac ccgggacaac tgaagcatgt ggttgatgtc acagacacag
841 tgaggaagga tgtggaggag tggggaccct tcgatcttgt gtacggcgcc acacctcccc
901 tgggccacac ctgtgaccgt cctcccagct ggtacctgtt ccagttccac cggctcctgc
961 agtacgcacg gcccaagcca ggcagccccg ggcccttctt ctggatgttc gtggacaatc
1021 tggtgctgaa caaggaagac ctggacgtcg catctcgctt cctggagatg gagccagtca
1081 ccatcccaga tgtccacggc ggatccttgc agaatgctgt ccgcgtgtgg agcaacatcc
1141 cagccataag gagcaggcac tgggctctgg tttcggaaga agaattgtcc ctgctggccc
1201 agaacaagca gagctcgaag ctcgcggcca agtggcccac caagctggtg aagaactgct
1261 ttctccccct aagagaatat ttcaagtatt tttcaacaga actcacttcc tctttataaa
1321 tgagtcacta tactgtgaag aaaaagactt ttcctagaac aaagaaaaaa aaaaaaaaaa
1381 aaaaaaaa
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