LOCUS BC002553 1319 bp mRNA linear HUM 30-SEP-2003 DEFINITION Homo sapiens aldehyde dehydrogenase 3 family, member B1, mRNA (cDNA clone IMAGE:3139031), complete cds. ACCESSION BC002553 VERSION BC002553.2 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1319) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1319) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 19, 2003 this sequence version replaced BC002553.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 4 Row: j Column: 21 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 4502042 This clone has the following problem: The cds is short compared to the longest cds in the locus. FEATURES Location/Qualifiers source 1..1319 /db_xref="H-InvDB:HIT000030986" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:3139031" /tissue_type="Placenta, choriocarcinoma" /clone_lib="NIH_MGC_21" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1319 /gene="ALDH3B1" /gene_synonym="ALDH4" /gene_synonym="ALDH7" /db_xref="GeneID:221" /db_xref="MIM:600466" CDS 72..764 /gene="ALDH3B1" /gene_synonym="ALDH4" /gene_synonym="ALDH7" /codon_start=1 /product="ALDH3B1 protein" /protein_id="AAH02553.1" /db_xref="GeneID:221" /db_xref="MIM:600466" /translation="MDPLGDTLRRLREAFHAGRTRPAEFRAAQLQGLGRFLQENKQLL HDALAQDLHKSAFESEVSEVAISQGEVTLALRNLRAWMKDERVPKNLATQLDSAFIRK EPFGLVLIIAPWNYPLNLTLVPLVGALAAGNCVVLKPSEISKNVEKILAEVLPQYVDQ SCFAVVLGGPQETGQLLEHRFDYIFFTGSPRVGKIVMTAAAKHPSKQRLPPPSWVFPL PASASSLSRSQP" misc_feature 102..680 /gene="ALDH3B1" /gene_synonym="ALDH4" /gene_synonym="ALDH7" /note="aldedh; Region: Aldehyde dehydrogenase family. This family of dehydrogenases act on aldehyde substrates. Members use NADP as a cofactor. The family includes the following members: The prototypical members are the aldehyde dehydrogenases EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This family also includes omega crystallin an eye lens protein from squid and octopus that has little aldehyde dehydrogenase activity" /db_xref="CDD:pfam00171" BASE COUNT 287 a 405 c 388 g 239 t ORIGIN 1 atttcttaac agcagggcca ccaggcagag cgggacagcc aggaggaagg gcagcttggc 61 agagcctcag gatggacccc cttggggaca cgctgcggcg actgcgggag gccttccacg 121 cggggcgcac acggccagct gagttccggg ctgcgcagct ccaaggcctg ggccgcttcc 181 tgcaagaaaa caagcagctt ctgcacgacg cactggccca ggacctgcac aagtcagcct 241 tcgagtcgga ggtgtctgag gttgccatca gccagggcga ggtcaccctg gccctcagga 301 acctccgggc ctggatgaag gacgagcgtg tgcccaagaa cctggccacg cagctggact 361 ccgccttcat ccggaaggag ccctttggcc tggtcctcat cattgcgccc tggaactatc 421 cgctgaacct gacgctggtg cccctcgtgg gagccctcgc tgcagggaac tgtgtggtgc 481 tgaagccatc ggagattagc aagaacgtcg agaagatcct ggccgaggtg ctgccccaat 541 acgtggacca gagctgcttt gctgtggtgc tgggcgggcc ccaggagacg gggcagctgc 601 tagagcacag gttcgactac atcttcttca cagggagccc tcgtgtgggc aagattgtta 661 tgactgctgc cgccaagcac ccctcaaagc agcgcctgcc tcctccctcc tgggtcttcc 721 ctctccctgc ctcagcctcc tccctcagcc gctcccaacc atgagagccg aggtgggagg 781 catgggaaac agtgcagtga ctcaccccct gcccccgcac caaccaccca tattcaggag 841 aagaggacag acacggcacc tctgagtcac ccctctcctg tggagcgggc gtccgagggg 901 ccctggcatc tgactcaggc cacaccatgg aatcactgca tccaaggcca ttcctgccct 961 ctctgagtct cagtttttcc atttgttcag tggagagaat taaccattga tacctcctgg 1021 ctgggtgagg cggctcacac ctgtaatccc agcactttgg gaggccgagg caggcggatc 1081 acctgaaatc aggagttcaa gatcagcctg gctaacatgg cgaaaccccg tctctactaa 1141 aaatacaaaa attagcctgg cgtggtggcg catgcctgta atcccagcta ctcaggaggc 1201 taaggcagga gaatcgcttg aacccgggag gtggaggttg ccgtgagctg agattgcgtc 1261 actgaactcc ggcctgggtg acagaaggag gctctgcctt aaaaaaaaaa aaaaaaaaa //