LOCUS BC002522 2658 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens suppressor of variegation 4-20 homolog 1 (Drosophila),
mRNA (cDNA clone IMAGE:3140476), complete cds.
ACCESSION BC002522
VERSION BC002522.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2658)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2658)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC002522.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 4 Row: e Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 50659083
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..2658
/db_xref="H-InvDB:HIT000030961"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3140476"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2658
/gene="SUV420H1"
/gene_synonym="CGI-85"
/gene_synonym="MGC21161"
/gene_synonym="MGC703"
/db_xref="GeneID:51111"
/db_xref="HGNC:HGNC:24283"
CDS 204..1385
/gene="SUV420H1"
/gene_synonym="CGI-85"
/gene_synonym="MGC21161"
/gene_synonym="MGC703"
/codon_start=1
/product="suppressor of variegation 4-20 homolog 1
(Drosophila)"
/protein_id="AAH02522.2"
/db_xref="GeneID:51111"
/db_xref="HGNC:HGNC:24283"
/translation="MKWLGESKNMVVNGRRNGGKLSNDHQQNQSKLQHTGKDTLKAGK
NAVERRSNRCNGNSGFEGQSRYVPSSGMSAKELCENDDLATSLVLDPYLGFQTHKMNT
SAFPSRSSRHFSKSDSFSHNNPVRFRPIKGRQEELKEVIERFKKDEHLEKAFKCLTSG
EWARHYFLNKNKMQEKLFKEHVFIYLRMFATDSGFEILPCNRYSSEQNGAKIVATKEW
KRNDKIELLVGCIAELSEIEENMLLRHGENDFSVMYSTRKNCAQLWLGPAAFINHDCR
PNCKFVSTGRDTACVKALRDIEPGEEISCYYGDGFFGENNEFCECYTCERRGTGAFKS
RVGLPAPAPVINSKYGLRETDKRLNRLKKLGDSSKNSDSQSVSSNTDADTTQEKNNAS
K"
BASE COUNT 827 a 491 c 635 g 705 t
ORIGIN
1 attatttttg gtgattaatt ttctgggggg gactgggacg cggggcccgg cggcgcggcc
61 ccgcatcgca gcggccgggc agcggggcct gggacgcgcc ccgaggagga gcggggcggc
121 gcaggcggag agaacattga aagtattctc taagctattt gaagagagtg actaaatgca
181 cctgggtcag gctgtctgtg ggtatgaagt ggttgggaga atccaagaac atggtggtga
241 atggcaggag aaatggaggc aagttgtcta atgaccatca gcagaatcaa tcaaaattac
301 agcacacggg gaaggacacc ctgaaggctg gcaaaaatgc agtcgagagg aggtcgaaca
361 gatgtaatgg taactcggga tttgaaggac agagtcgcta tgtaccatcc tctggaatgt
421 ccgccaagga actctgtgaa aatgatgacc tagcaaccag tttggttctt gatccctatt
481 taggttttca aacacacaaa atgaatacta gcgcctttcc ttcgaggagc tcaaggcatt
541 tttcaaaatc tgacagtttt tctcacaaca accctgtgag atttaggcct attaaaggaa
601 ggcaggaaga actaaaggaa gtaattgaac gttttaagaa agatgaacac ttggagaaag
661 ccttcaaatg tttgacttca ggcgaatggg cacggcacta ttttctcaac aagaataaaa
721 tgcaggagaa attattcaaa gaacatgtat ttatttattt gcgaatgttt gcaactgaca
781 gtggatttga aatattgcca tgtaatagat actcatcaga acaaaatgga gccaaaatag
841 ttgcaacaaa agagtggaaa cgaaatgaca aaatagaatt actggtgggt tgtattgccg
901 aactttcaga aattgaggag aacatgctac ttagacatgg agaaaacgac ttcagtgtca
961 tgtactccac aaggaaaaac tgtgctcaac tctggctggg tcctgctgcg tttataaacc
1021 atgattgcag acctaattgt aagtttgtgt caactggtcg agatacagca tgtgtgaagg
1081 ctctaagaga cattgaacct ggagaagaaa tttcttgtta ttatggagat gggttctttg
1141 gagaaaataa tgagttctgc gagtgttaca cttgcgaaag acggggcact ggtgctttta
1201 aatccagagt gggactgcct gcgcctgctc ctgttatcaa tagcaaatat ggactcagag
1261 aaacagataa acgtttaaat aggcttaaaa agttaggtga cagcagcaaa aattcagaca
1321 gtcaatctgt cagctctaac actgatgcag ataccactca ggaaaaaaac aatgcaagta
1381 agtaagggag atttgataag catatctttt aaaagtattt tcacacaatt tgctttataa
1441 agtgtgcttc agtagtttta aacttttaaa tactcagaga gactgggact tgtgagcttt
1501 ggctgcactt caaggctcta gacgtgattt gagtagaggc acagtctgta tcccatctct
1561 aacttcagta ccgtcctcta gactattttt cttgaatacc ttggtaactg gatatgagtt
1621 cttcatcata tgttccaagg tcatcatatg ttttaaacat tttcaaggtg ttagagactg
1681 tgatgatgtc gctaagtcct gcaagaagac aaaaggactg agtagaatta aattagactc
1741 tatacattcc agtgcctagc cagtttgtta gaaaagatga tggacttggg gaattcatag
1801 cttctggcct taaggcttcc accttttcat tgcttgctga cctttttcaa aacgaactga
1861 ctcagttcag cagaccacca gtaccagact cagaattgtg atagaggagc attttgaaca
1921 gtgccgtatt gtgacatgct gtattggcta ctccagaaag taggagtaaa gatggaaagg
1981 agaaagaagc aacctctgag attccagtgg tgtgtggggg caagatctga tggaaactga
2041 aaaagagaac gaagactaaa caaagagaaa ggaaagagaa gaaaccctaa atgggcaaag
2101 gaaagcacat cctgtttgcg gagctttgaa atattggaac catttctaat tgctcctgtt
2161 tttctgggta acaccagttt tctgtagttg ccactaaagc agtagactct tgagtctcac
2221 ttgtctctga gagagacaga agttagaaag ttttgacttg gcgattccga aagtatgcct
2281 ttgttggcac ttaaatgtcc agtgagactt cttggcacct tagagccctc tgagatactg
2341 attattttag gttcttctcc ctactttcag atgttttcag cccaacactg ggtgctctct
2401 tccactacag agaatcctga agaaaaggga aggtgtttcc catgatggtg aatgtcactg
2461 ccatgaattc ctgaatctac ctgctgctgg gagtcagagt ccaagcataa cccgtgtagc
2521 ataaaagcag cgctgtagcc ctattccagt ctttttcgtt aatgtccaga gtgaacaaca
2581 agagttagtc aatcattaac tgttgactgt tgattctcat aataaatgca gcataacgac
2641 aaaaaaaaaa aaaaaaaa
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