LOCUS BC002521 420 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens alpha thalassemia/mental retardation syndrome X-linked
(RAD54 homolog, S. cerevisiae), mRNA (cDNA clone IMAGE:3139907),
complete cds.
ACCESSION BC002521
VERSION BC002521.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 420)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 420)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC002521.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 4 Row: e Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 20336208
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..420
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3139907"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..420
/gene="ATRX"
/gene_synonym="ATR2"
/gene_synonym="MRXS3"
/gene_synonym="RAD54L"
/gene_synonym="SHS"
/gene_synonym="XH2"
/gene_synonym="XNP"
/gene_synonym="ZNF-HX"
/db_xref="GeneID:546"
/db_xref="MIM:300032"
CDS 91..363
/gene="ATRX"
/gene_synonym="ATR2"
/gene_synonym="MRXS3"
/gene_synonym="RAD54L"
/gene_synonym="SHS"
/gene_synonym="XH2"
/gene_synonym="XNP"
/gene_synonym="ZNF-HX"
/codon_start=1
/product="ATRX protein"
/protein_id="AAH02521.1"
/db_xref="GeneID:546"
/db_xref="MIM:300032"
/translation="MTAEPMSESKLNTLVQKLHDFLAHSSEESEETSSPPRLAMNQNT
DKISGSGSNSDMMENSKEEGTSSSEKSKSSGSSRSKRKPSIVNKND"
BASE COUNT 174 a 84 c 84 g 78 t
ORIGIN
1 ctccagtgca tttctatcgt aaccgggcgc gggggagcgc agatcggcgc ccagcaatca
61 cagaagccga caaggcgttc aagcgaaaac atgaccgctg agcccatgag tgaaagcaag
121 ttgaatacat tggtgcagaa gcttcatgac ttccttgcac actcatcaga agaatctgaa
181 gaaacaagtt ctcctccacg acttgcaatg aatcaaaaca cagataaaat cagtggttct
241 ggaagtaact ctgatatgat ggaaaacagc aaggaagagg gaactagctc ttcagaaaaa
301 tccaagtctt caggatcgtc acgatcaaag aggaaacctt caattgtaaa caaaaatgac
361 taaataaaaa gtatatattc acagtaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//