LOCUS BC002479 1470 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens cathepsin H, mRNA (cDNA clone MGC:1519 IMAGE:3349910),
complete cds.
ACCESSION BC002479
VERSION BC002479.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1470)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1470)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC002479.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 5 Row: l Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23110954.
FEATURES Location/Qualifiers
source 1..1470
/db_xref="H-InvDB:HIT000030926"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1519 IMAGE:3349910"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1470
/gene="CTSH"
/gene_synonym="MGC1519"
/gene_synonym="minichain"
/db_xref="GeneID:1512"
/db_xref="HGNC:HGNC:2535"
/db_xref="MIM:116820"
CDS 62..1069
/gene="CTSH"
/gene_synonym="MGC1519"
/gene_synonym="minichain"
/codon_start=1
/product="cathepsin H"
/protein_id="AAH02479.1"
/db_xref="GeneID:1512"
/db_xref="HGNC:HGNC:2535"
/db_xref="MIM:116820"
/translation="MWATLPLLCAGAWLLGVPVCGAAELSVNSLEKFHFKSWMSKHRK
TYSTEEYHHRLQTFASNWRKINAHNNGNHTFKMALNQFSDMSFAEIKHKYLWSEPQNC
SATKSNYLRGTGPYPPSVDWRKKGNFVSPVKNQGACGSCWTFSTTGALESAIAIATGK
MLSLAEQQLVDCAQDFNNHGCQGGLPSQAFEYILYNKGIMGEDTYPYQGKDGYCKFQP
GKAIGFVKDVANITIYDEEAMVEAVALYNPVSFAFEVTQDFMMYRTGIYSSTSCHKTP
DKVNHAVLAVGYGEKNGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASYPIPL
V"
BASE COUNT 391 a 399 c 377 g 303 t
ORIGIN
1 gacgctctgg gccgccacct ccgcggaccc tgagcgcaag agccaagccg ccagcgctgc
61 tatgtgggcc acgctgccgc tgctctgcgc cggggcctgg ctcctgggag tccccgtctg
121 cggtgccgcc gaactgtccg tgaactcctt agagaagttt cacttcaagt catggatgtc
181 taagcaccgt aagacctaca gtacggagga gtaccaccac aggctgcaga cgtttgccag
241 caactggagg aagataaacg cccacaacaa tgggaaccac acatttaaaa tggcactgaa
301 ccaattttca gacatgagct ttgctgaaat aaaacacaag tatctctggt cagagcctca
361 gaattgctca gccaccaaaa gtaactacct tcgaggtact ggtccctacc caccttccgt
421 ggactggcgg aaaaaaggaa attttgtctc acctgtgaaa aatcagggtg cctgcggcag
481 ttgctggact ttctccacca ctggggccct ggagtctgcg atcgccatcg caaccggaaa
541 gatgctgtcc ttggcggaac agcagctggt ggactgcgcc caggacttca ataatcacgg
601 ctgccaaggg ggtctcccca gccaggcttt cgagtatatc ctgtacaaca aggggatcat
661 gggtgaagac acctacccct accagggcaa ggatggttat tgcaagttcc aacctggaaa
721 ggccatcggc tttgtcaagg atgtagccaa catcacaatc tatgacgagg aagcgatggt
781 ggaggctgtg gccctctaca accctgtgag ctttgccttt gaggtgactc aggacttcat
841 gatgtataga acgggcatct actccagtac ttcctgccat aaaactccag ataaagtaaa
901 ccatgcagta cttgctgttg ggtatggaga aaaaaatggg atcccttact ggatcgtgaa
961 aaactcttgg ggtccccagt ggggaatgaa cgggtacttc ctcatcgagc gcggaaagaa
1021 catgtgtggc ctggctgcct gcgcctccta ccccatccct ctggtgtgag ccgtggcagc
1081 cgcagcgcag actggcggag aaggagagga acgggcagcc tgggcctggg tggaaatcct
1141 gccctggaag aagttgtggg gagatccact gggaccccca acattctgcc ctcacctctg
1201 tgcccagcct ggaaacctac agacaaggag gagttccacc atgagctcac ccgtgtctat
1261 gacgcaaaga tcaccagcca tgtgccttag tgtccttctt aacagactca aaccacatgg
1321 accacgaata ttctttctgt ccagaagggc tactttccac atatagagct ccagggactg
1381 tcttttctgt attcgctgtt caataaacat tgagtgagca cctccccaga tggaaaaaaa
1441 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//