LOCUS BC002448 2279 bp mRNA linear HUM 04-NOV-2003
DEFINITION Homo sapiens actin binding LIM protein 1, mRNA (cDNA clone MGC:1224
IMAGE:3347450), complete cds.
ACCESSION BC002448
VERSION BC002448.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2279)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2279)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 20, 2003 this sequence version replaced BC002448.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 5 Row: o Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21284386.
FEATURES Location/Qualifiers
source 1..2279
/db_xref="H-InvDB:HIT000030901"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1224 IMAGE:3347450"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2279
/gene="ABLIM1"
/gene_synonym="abLIM"
/gene_synonym="KIAA0059"
/gene_synonym="LIMAB1"
/gene_synonym="LIMATIN"
/db_xref="GeneID:3983"
/db_xref="MIM:602330"
CDS 226..1431
/gene="ABLIM1"
/gene_synonym="abLIM"
/gene_synonym="KIAA0059"
/gene_synonym="LIMAB1"
/gene_synonym="LIMATIN"
/codon_start=1
/product="ABLIM1 protein"
/protein_id="AAH02448.1"
/db_xref="GeneID:3983"
/db_xref="MIM:602330"
/translation="MFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRAKVDNEILDYKDL
AAIPKVKAIYDIERPDLITYEPFYTSGYDDKQERQSLGESPRTLSPTPSAEGYQDVRD
RMIHRSTSQGSINSPVYSRHSYTPTTSRSPQHFHRPDQGINIYRKPPIYKQHAALAAQ
SKSSEDIIKFSKFPAAQAPDPSETPKIETDHWPGPPSFAVVGPDMKRRSSGREEDDEE
LLRRRQLQEEQLMKLNSGLGQLILKEEMEKESRERSSLLASRYDSPINSASHIPSSKT
ASLPGYGRNGLHRPVSTDFAQYNSYGDVSGGVRDYQTLPDGHMPAMRMDRGVSMPNML
EPKIFPYEMLMVTNRGRNKILREVDRTRLERHLAPEVFREIFGMSIQEFDRLPLWRRN
DMKKKAKLF"
misc_feature 1321..1428
/gene="ABLIM1"
/gene_synonym="abLIM"
/gene_synonym="KIAA0059"
/gene_synonym="LIMAB1"
/gene_synonym="LIMATIN"
/note="VHP; Region: Villin headpiece domain"
/db_xref="CDD:smart00153"
BASE COUNT 687 a 545 c 542 g 505 t
ORIGIN
1 ttcggagaga agcctgatat gtaacccagg caggtgggag cctcagtctg tcgggctgag
61 gtctggcatc tacaaagcct cttggccgtg ttctgaactt gaagcctgga ggagttctct
121 gctcagcaca gccaaggaac agaattagaa gaaaaggaac cctggcctga ggcaggtgac
181 aaacattacc accccagctg tgcacgatgc agcagatgca accagatgtt cacagaagga
241 gaggaaatgt atcttcaagg ctccaccgtt tggcatcccg actgtaagca atctacgaag
301 accgaggaaa agctgcgggc aaaagtagac aatgagatcc tggattacaa ggatttagca
361 gccattccga aggtcaaggc aatttatgac attgaacgtc cagatcttat tacctatgag
421 cctttctaca cttcgggcta tgatgacaaa caggagagac agagccttgg agagtctccg
481 aggactttgt ctcctactcc atcagcagaa gggtaccagg atgttcggga tcggatgatc
541 catcggtcca cgagccaggg ctccatcaac tcccctgtgt acagccgcca cagctacact
601 ccaaccacgt cccgctctcc ccagcatttc cacagacctg atcaaggaat caacatttac
661 cgaaagccac ccatctacaa acagcatgct gccttggcag cccagagcaa gtcctcagaa
721 gatatcatca agttttccaa gttcccagca gcccaggcac cagaccccag cgagacacca
781 aagattgaga cggaccactg gcctggtccc ccctcatttg ctgtcgtagg acctgacatg
841 aaacgcagat ctagtggcag agaggaagat gatgaggaac ttctgagacg tcggcagctt
901 caagaagagc aattaatgaa gcttaactca ggcctgggac agttgatctt gaaagaagag
961 atggagaaag agagccggga aaggtcatct ctgttagcca gtcgctacga ttctcccatc
1021 aactcagctt cacatattcc atcatctaaa actgcatctc tccctggcta tggaagaaat
1081 gggcttcacc ggcctgtttc taccgacttc gctcagtata acagctatgg ggatgtcagc
1141 gggggagtgc gagattacca gacactccca gatggccaca tgcctgcaat gagaatggac
1201 cgaggagtgt ctatgcccaa catgttggaa ccaaagatat ttccatatga aatgctcatg
1261 gtgaccaaca gagggcgaaa caaaatcctc agagaggtgg acagaaccag gctggagcgc
1321 cacttagccc ctgaagtgtt tcgggaaatc tttggaatgt ccatacagga gtttgacagg
1381 ttacctcttt ggagacgcaa cgacatgaag aaaaaagcaa aactcttcta agtcccactc
1441 gtgaatggca attagagaaa ggactgacag tggcggtgcc ccataggatg tcatattgag
1501 gcccaaactt gattggagaa tttgcaaact accgtcgctc agcaacacca aaaagagaaa
1561 gtctggttaa aacaccatga gtcaaatgtc gggccagcca acagtaacac ttgccaagaa
1621 gcatggcgta gaaatttcta tgttccgaaa cacagagtag tgtccacatg tgagcttttc
1681 acattacctt atgtatacaa caggagctgc gttgttttct tctttttctt ttcctttatc
1741 tgttgtccaa caacagtgct gactgtccgg ataagagctg gcaagtgccc ttaggatgcc
1801 gcatgggaaa aatcggttat cataatttca aagtataaat atatttatta agtagcgctg
1861 cggctaagaa ggaagagtga ggggtctgtc catggggtgg cagtgatttc acacccgcct
1921 ttcttgaatg gcttcgtgtt actcagccgt gccctggcag gaatggaact ccatcaggga
1981 acagggcagc tctgtttgaa tggggtgaaa aacagcaaaa ttaattctta gcaagctcct
2041 tgttctctac tgttcaccgg gacctggctg gcaaatgact tagctattag tatatttaaa
2101 aactgttcaa aagcaaaaga gaaggaacag gaatgaaagg aaaccttccc ttaactcttt
2161 ctgcttccca tagcaggtct ggttcctgct ccccgcctag gacaggagct gtctggagct
2221 ccacctttgc aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
//