LOCUS BC002447 2760 bp mRNA linear HUM 04-OCT-2003
DEFINITION Homo sapiens putative homeodomain transcription factor 1, mRNA
(cDNA clone MGC:1307 IMAGE:3346990), complete cds.
ACCESSION BC002447
VERSION BC002447.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2760)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2760)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC002447.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 5 Row: o Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 5729975.
FEATURES Location/Qualifiers
source 1..2760
/db_xref="H-InvDB:HIT000030900"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1307 IMAGE:3346990"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2760
/gene="PHTF1"
/gene_synonym="PHTF"
/db_xref="GeneID:10745"
/db_xref="MIM:604950"
CDS 597..2510
/gene="PHTF1"
/gene_synonym="PHTF"
/codon_start=1
/product="PHTF1 protein"
/protein_id="AAH02447.1"
/db_xref="GeneID:10745"
/db_xref="MIM:604950"
/translation="MASNERDAISWYQKKIGAYDQQIWEKSIEQTQIKGLKNKPKKMG
HIKPDLIDVDLIRGSTFAKAKPEIPWTSLTRKGLVRVVFFPLFSNWWIQVTSLRIFVW
LLLLYFMQVIAIVLYLMMPIVNISEVLGPLCLMLLMGTVHCQIVSTQITRPSGNNGNR
RRRKLRKTVNGDGSRENGNNSSDKVRGIETLESVPIIGGFWETIFGNRIKRVKLISNK
GTETDNDPSCVHPIIKRRQCRPEIRMWQTREKAKFSDGEKCRREAFRRLGNGVSDDLS
SEEDGEARTQMILLRRSVEGASSDNGCEVKNRKSILSRHLNSQVKKTTTRWCHIVRDS
DSLAESEFESAAFSQGSRSGVSGGSRSLNMSRRDSESTRHDSETEDMLWDDLLHGPEC
RSSVTSDSEGAHVNTLHSGTKRDPKEDVFQQNHLFWLQNSSPSSDRVSAIIWEGNECK
KMDMSVLEISGIIMSRVNAYQQGVGYQMLGNVVTIGLAFFPFLHRLFREKSLDQLKSI
SAEEILTLFCGAPPVTPIIVLSIINFFERLCLTWMFFFMMCVAERTYKQRFLFAKLFS
HITSARKARKYEIPHFRLKKVENIKIWLSLRSYLKRRGPQRSVDVVVSSVFLLTLSIA
FICCAQVKVSHLL"
BASE COUNT 759 a 566 c 676 g 759 t
ORIGIN
1 gtcactgcat cccggcgcgg cccgcagaag acgagcgccg ctgccgcctc ctcctcccgg
61 gctcccgggc tctcggggtc cggggccttt gcacctgtct tttccagctg ggcacaaagc
121 cttttgctgt cgccgtggcg actggaggcc ttcactttta atccccctca ttttccagtt
181 cattctctgc ttattttctg gtcagtccgt gaccctgtag gcggcctctg accggcgatc
241 gatttgccgc cctcagggcg ctgggcggcc ggctgcctcc gaagctgggg cggcctccgc
301 ggtctccatg gtaacggcct ctccggcgtc tccgcctgga ggggaagatg cggcctgcct
361 ggcccgccgc ctcgcccccg gcctcacggt gggaccccgg gcactgagga cggaggtccc
421 gggcgctggc ccgcggggca acgggcacta gctggagaaa gagcagctca tggagaggct
481 gagagaagcg gttttcgcgt cctacccaaa ctgggagagt aaccttcagc agctggactc
541 accgattggt tttccttcat tttcagtgaa atcccattct ctggctggag acacagatgg
601 cctcaaatga gagagatgct atatcgtggt accaaaagaa gattggagcc tacgatcagc
661 agatatggga aaagtcaatc gaacagactc agattaaggg tttgaaaaac aaaccgaaaa
721 agatgggcca cataaagcca gacttgattg acgttgactt aatcagaggg tcaacatttg
781 ccaaagcaaa acctgaaatt ccatggacat ctctgactcg gaaggggctt gttcgagttg
841 tattttttcc attgttcagc aattggtgga ttcaggttac ctctttaaga atctttgttt
901 ggctgttact actttatttc atgcaagtta tagcaattgt cttatatttg atgatgccta
961 ttgtgaacat aagtgaagta cttggaccct tgtgccttat gctactcatg ggaactgtcc
1021 actgtcaaat tgtgtctact cagataacaa gaccatcagg aaacaatgga aatcgaagaa
1081 gaagaaaatt acgaaaaact gtaaatggtg atgggagccg agaaaatgga aataactcct
1141 ctgataaagt cagaggaata gaaactttgg aatctgtacc cattattggt ggtttttggg
1201 agactatctt tggcaacagg attaaaagag taaaattaat atctaacaaa gggactgaaa
1261 ctgacaatga cccaagttgt gtccatccta tcattaagag gagacaatgt cgaccagaga
1321 ttagaatgtg gcaaacaaga gagaaagcaa aattttcaga tggagaaaag tgccgtaggg
1381 aggcttttag gcgtttgggt aatggggtgt ctgatgacct gtcaagtgaa gaagatggtg
1441 aagcacggac acagatgata ttattgcgta ggagtgtgga aggggcctca agtgacaatg
1501 gttgtgaagt taagaataga aaatcaatac tttcaaggca cctaaactct caggtaaaga
1561 aaaccactac aaggtggtgt catattgtgc gggattcaga tagtctggct gaatcagaat
1621 ttgaatcagc agccttcagc cagggctcta gatcgggtgt gagtggtggc tctcgaagcc
1681 tcaacatgtc aagaagagac tcagaaagca cccgccatga ctcggagact gaggacatgt
1741 tatgggacga cctgctacat ggcccagagt gccggtcatc tgtcaccagt gacagtgagg
1801 gggcccatgt gaataccctt cactcaggga ccaaacgtga ccccaaagag gatgtttttc
1861 agcagaatca tttattctgg cttcagaatt caagtccttc ctctgatcga gttagtgcaa
1921 taatctggga ggggaatgag tgcaaaaaga tggatatgtc tgtgttggaa ataagtggca
1981 tcatcatgag cagggtcaat gcctatcagc aaggagtagg ttatcagatg ctgggaaatg
2041 ttgtcactat tggattagca ttttttccat tcttacatcg acttttccgt gagaagagcc
2101 ttgaccaact aaagtccatt tcagctgagg agatcttgac tctcttttgt ggggcaccac
2161 ctgttacacc tattattgtt ttgtcgataa ttaatttttt tgaaagattg tgtcttactt
2221 ggatgttttt tttcatgatg tgtgtggcag agagaacata taaacagaga tttttatttg
2281 caaaactctt cagccatatt acttctgcca ggaaagctag gaaatatgaa atacctcatt
2341 tcagacttaa gaaggtggag aatattaaaa tatggttatc actgcgttcc tatctaaaga
2401 gacgggggcc acagcgttca gttgatgtgg ttgtatcctc ggttttccta ctgacacttt
2461 cgattgcttt catttgttgt gctcaggtaa aagtttcaca tctgctttaa ggaaaaatga
2521 aaattctatt atagagttca ctttctgttt tagacttagg tcactgtcct taagtatgta
2581 tttttaatgc atctacattt tttactattt tggatgtttg gtaatttttc taacttttca
2641 aaatgggaat acaagtaatt ctgaagtcct ttcaaactgt aagatcgctc taattttagt
2701 tggtaattat taattgataa taaaactatc atatgattgc aaaaaaaaaa aaaaaaaaaa
//