LOCUS BC002268 1038 bp mRNA linear ROD 15-JUL-2006
DEFINITION Mus musculus H3 histone, family 3A, mRNA (cDNA clone MGC:7653
IMAGE:3495830), complete cds.
ACCESSION BC002268
VERSION BC002268.1
KEYWORDS MGC.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1038)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1038)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lothar Hennighausen Ph.D., Robin Humphreys
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 8 Row: b Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, GenomeScan gene prediction.
FEATURES Location/Qualifiers
source 1..1038
/organism="Mus musculus"
/mol_type="mRNA"
/strain="mix FVB/N, C57BL/6J"
/db_xref="taxon:10090"
/clone="MGC:7653 IMAGE:3495830"
/tissue_type="Mammary tumor. WAP-TGF alpha model. 7 months
old, gross tissue."
/clone_lib="NCI_CGAP_Mam5"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1038
/gene="H3f3a"
/gene_synonym="H3.3A"
/db_xref="GeneID:15078"
/db_xref="MGI:MGI:1097686"
CDS 102..512
/gene="H3f3a"
/gene_synonym="H3.3A"
/codon_start=1
/product="H3 histone, family 3A"
/protein_id="AAH02268.1"
/db_xref="GeneID:15078"
/db_xref="MGI:MGI:1097686"
/translation="MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRP
GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLV
GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA"
BASE COUNT 299 a 227 c 218 g 294 t
ORIGIN
1 gccttcgccg cgccgctgcc gctctccaac gccagcgccg cctctcgctt gccgagctcc
61 agccgaagga gaaggggggt aagtaaggag gtgtccttac catggctcgt acaaagcaga
121 ctgcccgcaa atccaccggt ggtaaagcac ccaggaaaca actggctaca aaagccgctc
181 gcaagagtgc gccctctact ggaggggtga agaaacctca tcgttacagg cctggtactg
241 tggccctccg tgaaatcaga cgctatcaga agtccactga acttctgatc cgcaagctcc
301 cctttcagcg tctggtgcga gaaattgctc aggacttcaa aacagatctg cgcttccaga
361 gtgcagctat tggtgctttg caggaggcaa gtgaggccta tctggttggc ctttttgaag
421 ataccaatct gtgtgctatc catgccaaac gtgtaacaat tatgccaaaa gatatccagc
481 tagcacgccg catacgcgga gaacgtgctt aagagtccac tatgagggga aacatttcat
541 tctcaaaaaa attttttttc ctcttcttcc tgttatcagt agttctgaat gttagatatt
601 ttttccatgg ggtcaaaggt acctaagtat atgattgcga gtggaaacat aggggacaga
661 atcaggtatt ggcgtttctc cacgttcatt tgtgtgtgaa tttttaatat aaatgcaaga
721 tggaaagcat taatgcaagc aaaatgtttc agtgaacaca tttcaacagt tcaactttat
781 aacaattata aataaacctg ttaaaatttt ctggacaatg ccagcatttg gattttttta
841 aaataagtaa atttcttatt gacggcaact aaatggtgtt tgtagcattt ttatcacaca
901 gtagattcca tccattcact atacttttct aactgagttg tcctacatac aagtacatgt
961 ttttaatgtt gtcagtcttc tgtgctgttc ctgtaagttt gctattaaaa tacattaaac
1021 tataaaaaaa aaaaaaaa
//