LOCUS BC001798 3041 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens sorting nexin 6, mRNA (cDNA clone MGC:3157
IMAGE:3354467), complete cds.
ACCESSION BC001798
VERSION BC001798.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3041)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3041)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-JAN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 6 Row: n Column: 9
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..3041
/db_xref="H-InvDB:HIT000030660"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3157 IMAGE:3354467"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3041
/gene="SNX6"
/gene_synonym="MSTP010"
/gene_synonym="TFAF2"
/db_xref="GeneID:58533"
/db_xref="HGNC:HGNC:14970"
/db_xref="MIM:606098"
CDS 498..1370
/gene="SNX6"
/gene_synonym="MSTP010"
/gene_synonym="TFAF2"
/codon_start=1
/product="SNX6 protein"
/protein_id="AAH01798.1"
/db_xref="GeneID:58533"
/db_xref="HGNC:HGNC:14970"
/db_xref="MIM:606098"
/translation="MTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRRD
LNFHVFLEYNQDLSVRGKNKKEKLEDFFKNMVKSADGVIVSGVKDVDDFFEHERTFLL
EYHNRVKDASAKSDRMTRSHKSAADDYNRIGSSLYALGTQDSTDICKFFLKVSELFDK
TRKIEARVSADEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKN
KDVLQAETSQQLCCQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNL
QLLQNCLAVLNGDT"
BASE COUNT 898 a 590 c 647 g 906 t
ORIGIN
1 tgggtgttct ccgcggcgcc gagtcccggg agcgcggtgg gggcagcggg cgcggggcgg
61 gcgcggggac cgcgccagcc tgtcactaat gtctcccttt gtgtctcccc catctcatcc
121 ttttccccgg cgcgccgtgc ccgccgaccc cacaggaagg cctggacgac ggcccggact
181 tcctctcaga agaggaccgc ggacttaaag caataaatgt agatcttcaa agtgatgctg
241 ctctgcaggt ggacatttct gatgctctta gtgagcggga taaagtaaaa ttcactgttc
301 acacaaagag ttcattgcca aattttaaac aaaacgagtt ttcagttgtt cggcaacatg
361 aggaatttat ctggcttcat gattcctttg ttgaaaatga agactatgca ggttatatca
421 ttccaccagc accaccaaga cctgattttg atgcttcaag ggaaaaacta cagaagcttg
481 gtgaaggaga agggtcaatg acgaaggaag aattcacaaa gatgaaacag gaactggaag
541 ctgaatattt ggcaatattc aagaagacag ttgcgatgca tgaagtgttc ctgtgtcgtg
601 tggcagcaca tcctattttg agaagagatt taaatttcca tgtcttcttg gaatataatc
661 aagatttgag tgtgcgagga aaaaataaaa aagagaaact tgaagacttc tttaaaaaca
721 tggttaaatc agcagatgga gtaatcgttt caggagtaaa ggatgtagat gatttctttg
781 agcacgaacg aacatttctt ttggaatatc ataaccgagt taaggatgca tctgctaaat
841 ctgatagaat gacaagatcc cacaaaagtg ctgcagatga ttacaataga attggttctt
901 cattatatgc tttaggaact caggattcta cagatatatg caagtttttt ctcaaagttt
961 cagaactgtt cgataaaaca agaaaaatag aagcacgagt gtctgctgat gaagacctca
1021 aactttctga tcttttaaaa tattacttaa gagaatctca agctgctaag gatctcctgt
1081 atcgaaggtc taggtcacta gtggattatg aaaatgctaa taaagcactg gataaagcaa
1141 gagcaaaaaa taaagatgtt ctacaggccg aaacttccca acaattatgt tgtcagaaat
1201 ttgaaaaaat atctgagtct gcaaaacaag aacttataga ttttaagaca agaagagttg
1261 ctgcattcag aaaaaattta gtggaactgg cagagttaga actgaagcat gcaaagggta
1321 atctacagtt gctgcagaac tgcctggcag tgttaaatgg agacacataa gccacactcc
1381 gccttcctgt taaaaagggc tgccttcctt caaattttat ttttgttttc ttaatgatgt
1441 taagcattta tgctcactgg aaacaaacaa aaagcagctg aaaaagtgca tcaactcctc
1501 tttttctgag aaacatggag cagcgcacgc ccaggcgatg ccagtctgtg tgccgtgatg
1561 ccgcactgtg ttccccatga cagtgatcca tcatcgtgca ctcgtcatac tcagaagtcc
1621 aaagttcatt cttctttaaa gtagcctcta taactctgtt tattttataa atagtattcc
1681 ttatggctgc cactcttatt tacctttaaa taatttctga aatttaacct tttcagaatg
1741 cattgttgaa acaagataaa gattgccttt tttgaatttt ttaaattttg tttttaaaag
1801 catataccac cttagttcat tcatgtatcc tggtaaagca tcttaatcag acttattttt
1861 aattactgaa tatttcttag acgttttggg acagatttta tgtaatcttt ataagtatga
1921 tttctgaaga aaagcaaatg cattagtatg tttgccttaa acttgtagac taaaccaagt
1981 attgtaaaat aaacagcgat aacagtgata gtttttaact ctatggtcat tgtatcactc
2041 tggaaaatgt ggagtagctg taataaatct actcctgtat tatgctttac agtgcaggtc
2101 ttagtttttc ttttttctca tttcttttga aatggcatct cgaacaaagt ccaccaatcc
2161 ctttacaaaa gaatgaactg ctcctctgtg tgtacttcat agaaggtgga atcggacaga
2221 ggcaggttag tgacagttat tcctgaaata caggagcaga gtacagtctg ttgtggtttc
2281 ccggattccg cgcctagctc agccaattaa gcatgagaca taggccattg agccacttag
2341 tagttatgcg agtggataga ttggtatgta gagggaaaga ggtctgctgt aaagaacaac
2401 acttgtttgt ctgtggggaa agaaaagcag aatacttgag atgaaagttg gcatacaaat
2461 aggatactat cgccagtagt tatattacaa acattatcgg cctttctagt gtgaatgaac
2521 attagacaca ttattgtcat tcctagttta aagttaaggt tgcgtggttg gatttttcca
2581 ctatcttttt agtttgttta cattttcctg aaccctcctg agcgcccgtt cttggtctaa
2641 tccccagtcg tgatgattcc acacttcctc agccgcatgt tgtcttgcct cattcatgag
2701 ctggtcagcg tttcgtctct ttaactgaca tgttccccag tgctgtttga actgttgagt
2761 ttccgttgct ggctgagtgc gttttgtcct tcacgtaacc ttcgctggta aaaataagcc
2821 catgtgatgt ccaccagtgg atgaatgctg gaccgagagc cctagcttct ggatccaggt
2881 ctaggccctt catctgctgc tctgtggccc agggcaggtt tgcttgacct ctgcctcagt
2941 tctcgactct aaaggacata ctgacctacc tcacaggggt gttgtgagga ttaataaatg
3001 ttggtactct gctttggaaa aaaaaaaaaa aaaaaaaaaa a
//