LOCUS BC001746 3293 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens protein tyrosine phosphatase, non-receptor type 7,
mRNA (cDNA clone MGC:2258 IMAGE:3543111), complete cds.
ACCESSION BC001746
VERSION BC001746.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3293)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3293)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (16-JAN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis M. Staudt, M.D., Ph.D.
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 8 Row: i Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 18375659.
FEATURES Location/Qualifiers
source 1..3293
/db_xref="H-InvDB:HIT000030620"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:2258 IMAGE:3543111"
/tissue_type="Lymph, Burkitt lymphoma"
/clone_lib="NIH_MGC_8"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3293
/gene="PTPN7"
/gene_synonym="BPTP-4"
/gene_synonym="HEPTP"
/gene_synonym="LC-PTP"
/gene_synonym="LPTP"
/gene_synonym="PTPNI"
/db_xref="GeneID:5778"
/db_xref="HGNC:HGNC:9659"
/db_xref="MIM:176889"
CDS 473..1672
/gene="PTPN7"
/gene_synonym="BPTP-4"
/gene_synonym="HEPTP"
/gene_synonym="LC-PTP"
/gene_synonym="LPTP"
/gene_synonym="PTPNI"
/codon_start=1
/product="protein tyrosine phosphatase, non-receptor type
7"
/protein_id="AAH01746.2"
/db_xref="GeneID:5778"
/db_xref="HGNC:HGNC:9659"
/db_xref="MIM:176889"
/translation="MGASFWPIRQAREQQRRALSFRQTSWLSEPPLGPAPHLSMVQAH
GGRSRAQPLTLSLGAAMTQPPPEKTPAKKHVRLQERRGSNVALMLDVRSLGAVEPICS
VNTPREVTLHFLRTAGHPLTRWALQRQPPSPKQLEEEFLKIPSNFVSPEDLDIPGHAS
KDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDGKEKVYIATQGPMPNTVSDF
WEMVWQEEVSLIVMLTQLREGKEKCVHYWPTEEETYGPFQIRIQDMKECPEYTVRQLT
IQYQEERRSVKHILFSAWPDHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHCSAGI
GRTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQFLHHTLALYAGQ
LPEEPSP"
BASE COUNT 781 a 989 c 853 g 670 t
ORIGIN
1 ccagaaacag acctgggagt ggaacagcag cagttaggag aggaccctgc tggggtccag
61 gagcccgcct gcctggctgc ccaaccagct ccaacactgc tggaggcctc cattctctgt
121 tcaggggaag gcccactggt tagctcagag atggcttctg cgtgctttct cccttccgtc
181 ctagagaaca catattttct gtttcctccc ttgccttctc ccacttggac ctgctcagag
241 ccctgtgtac tctggtgtgt ggcctctctc ccctctctct tttcctcctt ctggattctt
301 tcctatcttc atccacaatc tctacccttt atcttgccgt tactctaccc cgagactgcc
361 ttctgccctg ggtcccacca aatagatcct gtccttccct tagtgaaaat gaggccacct
421 cttggggaac agaagacgcc ccagtgaaaa cagagtgcaa acctggcctg gcatgggagc
481 ctccttctgg ccaatcaggc aggccagaga acagcagcgg agggccctgt ctttcaggca
541 gacctcatgg ctgagtgagc ctcccctggg cccagcaccc cacctcagca tggtccaagc
601 ccatgggggg cgctccagag cacagccgtt gaccttgtct ttgggggcag ccatgaccca
661 gcctccgcct gaaaaaacgc cagccaagaa gcatgtgcga ctgcaggaga ggcggggctc
721 caatgtggct ctgatgctgg acgttcggtc cctgggggcc gtagaaccca tctgctctgt
781 gaacacaccc cgggaggtca ccctacactt tctgcgcact gctggacacc cccttacccg
841 ctgggccctt cagcgccagc cacccagccc caagcaactg gaagaagaat tcttgaagat
901 cccttcaaac tttgtcagcc ccgaagacct ggacatccct ggccacgcct ccaaggaccg
961 atacaagacc atcttgccaa atccccagag ccgtgtctgt ctaggccggg cacagagcca
1021 ggaggacgga gattacatca atgccaacta catccgaggc tatgacggga aggagaaggt
1081 ctacattgcc acccagggcc ccatgcccaa cactgtgtcg gacttctggg agatggtgtg
1141 gcaagaggaa gtgtccctca ttgtcatgct cactcagctc cgagagggca aggagaaatg
1201 tgtccactac tggcccacag aagaggaaac ctatggaccc ttccagatcc gcatccagga
1261 catgaaagag tgcccagaat acactgtgcg gcagctcacc atccagtacc aggaagagcg
1321 ccggtcagta aagcacatcc tcttttcggc ctggccagac catcagacac cagaatcagc
1381 tgggcccctg ctgcgcctag tggcagaggt ggaggagagc ccggagacag ccgcccaccc
1441 cgggcctatc gtagtccact gcagtgcagg gattggccgg acgggctgct tcatcgccac
1501 gcgaattggc tgtcaacagc tgaaagcccg aggagaagtg gacattctgg gtattgtgtg
1561 ccaactgcgg ctagacagag gggggatgat ccagacggca gagcagtacc agttcctgca
1621 ccacactttg gccctgtatg caggccagct gcctgaggaa cccagcccct gacccctgcc
1681 accctccggt ggcccaggtg cctacctccc tcaagcctgg gaaggtgggt ctggggaaag
1741 tgggccgagt gatctggggg taccccttgg gttggtgtgg ggaaggagtg cctccttagt
1801 ggtgcttgca gtcacaggaa gcagcagcag taaggacaag gggccggatt ccaggtcttc
1861 aacactggcc actcctctgc ttcctctgtt ggccccagat ggacagtaag gggaacctcc
1921 aatgtctctc tgaacttaaa gacaggagct ggcatttatg acagacaaag aaagaagccc
1981 aggtgtcctg gtgttctctg agacactctt tgtgagcttc agtttcctgt tctataacat
2041 gaacataagt gcttagctgc catgagggaa aagtaatgag agaagtttct agaagccact
2101 ccagccactc cttcctgggg ctgacaaaag ggtgattcca agatcatcct tcacccgagg
2161 tcctgcccaa gcacaggcca gatgcaagaa tggggaaaag tctggtcctg atctccaagt
2221 ctcaacatcc tatcagtgac tctgctccct gaccacacat cggaagggct ggatgacccc
2281 aatcaaaaga aagaacaagg actctggtta cccttgcctc cacccatgtg tcataagagt
2341 aggctacaga ggtgaccagg cctggcagtt gaaatctctg gaagagggaa catgtgggga
2401 ctactcagag gcaaagagga gctgctcctg cctccatggt tgctggcctc tcccaccaac
2461 tactcttagg gaggctaagc agtctctgtt ttgcttccat ggctcaaata ataccctggg
2521 tatgcaggac ccactatacc ttgcatttgc tgagtacacc tagagagctt ggctgtttcc
2581 aaaaacaatc agggtcataa ccatccatgc agacatggag gctcggctga accaggactc
2641 ctcactgtct acctgagaga atgagcaccc ctcatccatc tcagcatcaa cacaatttcc
2701 aggggacctc aggtctacct caggactgaa cgccacacct caggattcct cctccttgaa
2761 tctgagactg gctgcccatt ctgagatggg gatgaaggta agatgccgca tcaccaggca
2821 cgccgcccct gacagctgcc ttgataccag ctctctgtgg aaacccccga ggagttggat
2881 ctggagaaca gctgggcctc ctcactcagg acttctctcc tgaagaacac gcagtgctaa
2941 aactgaggat gatttcccta atgcttctgc ttggccttat ggaggagctg ctccttcctt
3001 acagccttgg ggatggactt gcccacacct ccacctcccc tgagccctgt gagaggcacg
3061 actgtctatg ccaatgaggc tcggtggggg gctctcaagt gcctgatcct gccctgggct
3121 cagagccagc ccagagggaa gcaactgcac agccccacag gccctccttg gcactgtccc
3181 cccaacccca tctcagagct cagagggtac aagctccaga acagtaacca agtgggaaaa
3241 taaagacttc ttggatgact gaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa
//