LOCUS BC001596 2640 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase), mRNA (cDNA clone MGC:1530 IMAGE:3543914), complete cds. ACCESSION BC001596 VERSION BC001596.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2640) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2640) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (03-JAN-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC/DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 8 Row: m Column: 20 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 19718752. FEATURES Location/Qualifiers source 1..2640 /db_xref="H-InvDB:HIT000030505" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:1530 IMAGE:3543914" /tissue_type="Skin, melanotic melanoma." /clone_lib="NIH_MGC_20" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..2640 /gene="BAP1" /gene_synonym="HUCEP-13" /gene_synonym="hucep-6" /gene_synonym="KIAA0272" /db_xref="GeneID:8314" /db_xref="HGNC:HGNC:950" /db_xref="MIM:603089" CDS 116..2305 /gene="BAP1" /gene_synonym="HUCEP-13" /gene_synonym="hucep-6" /gene_synonym="KIAA0272" /codon_start=1 /product="BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase)" /protein_id="AAH01596.1" /db_xref="GeneID:8314" /db_xref="HGNC:HGNC:950" /db_xref="MIM:603089" /translation="MNKGWLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKCQGPVY GFIFLFKWIEERRSRRKVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLN CSSVDLGPTLSRMKDFTKGFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLS AVRTMEAFHFVSYVPITGRLFELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLAT AGEPYHDIRFNLMAVVPDRRIKYEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKS QESQLPEESKSASNKSPLVLEANRAPAASEGNHTDGAEEAAGSCAQAPSHSPPNKPKL VVKPPGSSLNGVHPNPTPIVQRLPAFLDNHNYAKSPMQEEEDLAAGVGRSRVPVRPPQ QYSDDEDDYEDDEEDDVQNTNSALRYKGKGTGKPGALSGSADGQLSVLQPNTINVLAE KLKESQKDLSIPLSIKTSSGAGSPAVAVPTHSQPSPTPSNESTDTASEIGSAFNSPLR SPIRSANPTRPSSPVTSHISKVLFGEDDSLLRVDCIRYNRAVRDLGPVISTGLLHLAE DGVLSPLALTEGGKGSSPSIRPIQGSQGSSSPVEKEVVEATDSREKTGMVRPGEPLSG EKYSPKELLALLKCVEAEIANYEACLKEEVEKRKKFKIDDQRRTHNYDEFICTFISML AQEGMLANLVEQNISVRRRQGVSIGRLHKQRKPDRRKRSRPYKAKRQ" BASE COUNT 604 a 760 c 799 g 477 t ORIGIN 1 gcccgttgtc tgtgtgtggg actgaggggc cccgggggcg gtgggggctc ccggtggggg 61 cagcggtggg gagggagggc ctggacatgg cgctgagggg ccgccccgcg ggaagatgaa 121 taagggctgg ctggagctgg agagcgaccc aggcctcttc accctgctcg tggaagattt 181 cggtgtcaag ggggtgcaag tggaggagat ctacgacctt cagagcaaat gtcagggccc 241 tgtatatgga tttatcttcc tgttcaaatg gatcgaagag cgccggtccc ggcgaaaggt 301 ctctaccttg gtggatgata cgtccgtgat tgatgatgat attgtgaata acatgttctt 361 tgcccaccag ctgataccca actcttgtgc aactcatgcc ttgctgagcg tgctcctgaa 421 ctgcagcagc gtggacctgg gacccaccct gagtcgcatg aaggacttca ccaagggttt 481 tagccctgag agcaaaggat atgcgattgg caatgccccg gagttggcca aggcccataa 541 tagccatgcc aggcccgagc cacgccacct ccctgagaag cagaatggcc ttagtgcagt 601 gcggaccatg gaggcgttcc actttgtcag ctatgtgcct atcacaggcc ggctctttga 661 gctggatggg ctgaaggtct accccattga ccatgggccc tggggggagg acgaggagtg 721 gacagacaag gcccggcggg tcatcatgga gcgtatcggc ctcgccactg caggggagcc 781 ctaccacgac atccgcttca acctgatggc agtggtgccc gaccgcagga tcaagtatga 841 ggccaggctg catgtgctga aggtgaaccg tcagacagta ctagaggctc tgcagcagct 901 gataagagta acacagccag agctgattca gacccacaag tctcaagagt cacagctgcc 961 tgaggagtcc aagtcagcca gcaacaagtc cccgctggtg ctggaagcaa acagggcccc 1021 tgcagcctct gagggcaacc acacagatgg tgcagaggag gcggctggtt catgcgcaca 1081 agccccatcc cacagccctc ccaacaaacc caagctagtg gtgaagcctc caggcagcag 1141 cctcaatggg gttcacccca accccactcc cattgtccag cggctgccgg cctttctaga 1201 caatcacaat tatgccaagt cccccatgca ggaggaagaa gacctggcgg caggtgtggg 1261 ccgcagccga gttccagtcc gcccacccca gcagtactca gatgatgagg atgactatga 1321 ggatgacgag gaggatgacg tgcagaacac caactctgcc cttaggtata aggggaaggg 1381 aacagggaag ccaggggcat tgagcggttc tgctgatggg caactgtcag tgctgcagcc 1441 caacaccatc aacgtcttgg ctgagaagct caaagagtcc cagaaggacc tctcaattcc 1501 tctgtccatc aagactagca gcggggctgg gagtccggct gtggcagtgc ccacacactc 1561 gcagccctca cccaccccca gcaatgagag tacagacacg gcctctgaga tcggcagtgc 1621 tttcaactcg ccactgcgct cgcctatccg ctcagccaac ccgacgcggc cctccagccc 1681 tgtcacctcc cacatctcca aggtgctttt tggagaggat gacagcctgc tgcgtgttga 1741 ctgcatacgc tacaaccgtg ctgtccgtga tctgggtcct gtcatcagca caggcctgct 1801 gcacctggct gaggatgggg tgctgagtcc cctggcgctg acagagggtg ggaagggttc 1861 ctcgccctcc atcagaccaa tccaaggcag ccaggggtcc agcagcccag tggagaagga 1921 ggtcgtggaa gccacggaca gcagagagaa gacggggatg gtgaggcctg gcgagccctt 1981 gagtggggag aaatactcac ccaaggagct gctggcactg ctgaagtgtg tggaggctga 2041 gattgcaaac tatgaggcgt gcctcaagga ggaggtagag aagaggaaga agttcaagat 2101 tgatgaccag agaaggaccc acaactacga tgagttcatc tgcaccttta tctccatgct 2161 ggctcaggaa ggcatgctgg ccaacctagt ggagcagaac atctccgtgc ggcggcgcca 2221 aggggtcagc atcggccggc tccacaagca gcggaagcct gaccggcgga aacgctctcg 2281 cccctacaag gccaagcgcc agtgaggact gctggccctg actctgcagc ccactcttgc 2341 cgtgtggccc tcaccagggt ccttccctgc cccacttccc cttttcccag tattactgaa 2401 tagtcccagc tggagagtcc aggccctggg aatgggagga accaggccac attccttcca 2461 tcgtgccctg aggcctgaca cggcagatca gccccatagt gctcaggagg cagcatctgg 2521 agttggggca cagcgaggta ctgcagcttc ctccacagcc ggctgtggag cagcaggacc 2581 tggcccttct gcctgggcag cagaatatat attttaccta tcaaaaaaaa aaaaaaaaaa //