LOCUS BC001585 2012 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens ligatin, mRNA (cDNA clone MGC:5626 IMAGE:3463026),
complete cds.
ACCESSION BC001585
VERSION BC001585.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2012)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2012)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (21-DEC-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 4 Row: l Column: 18.
FEATURES Location/Qualifiers
source 1..2012
/db_xref="H-InvDB:HIT000030499"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:5626 IMAGE:3463026"
/tissue_type="Cervix, carcinoma"
/clone_lib="NIH_MGC_12"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2012
/gene="LGTN"
/gene_synonym="HCA56"
/db_xref="GeneID:1939"
/db_xref="HGNC:HGNC:6583"
/db_xref="MIM:151625"
CDS 108..1862
/gene="LGTN"
/gene_synonym="HCA56"
/codon_start=1
/product="ligatin"
/protein_id="AAH01585.1"
/db_xref="GeneID:1939"
/db_xref="HGNC:HGNC:6583"
/db_xref="MIM:151625"
/translation="MFAKAFRVKSNTAIKGSDRRKLRADVTTAFPTLGTDQVSELVPG
KEELNIVKLYAHKGDAVTVYVSGGNPILFELEKNLYPTVYTLWSYPDLLPTFTTWPLV
LEKLVGGADLMLPGLVMPPAGLPQVQKGDLCAISLVGNRAPVAIGVAAMSTAEMLTSG
LKGRGFSVLHTYQDHLWRSGNKSSPPSIAPLALDSADLSEEKGSVQMDSTLQGDMRHM
TLEGEEENGEVHQAREDKSLSEAPEDTSTRGLNQDSTDSKTLQEQMDELLQQCFLHAL
KCRVKKADLPLLTSTFLGSHMFSCCPEGRQLDIKKSSYKKLSKFLQQMQQEQIIQVKE
LSKGVESIVAVDWKHPRITSFVIPEPSPTSQTIQEGSREQPYHPPDIKPLYCVPASMT
LLFQESGHKKGSFLEGSEVRTIVINYAKKNDLVDADNKNLVRLDPILCDCILEKNEQH
TVMKLPWDSLLTRCLEKLQPAYQVTLPGQEPIVKKGRICPIDITLAQRASNKKVTVVR
NLEAYGLDPYSVAAILQQRCQASTTVNPAPGAKDSLQVQIQGNQVHHLGWLLLEEYQL
PRKHIQGLEKALKPGKKK"
BASE COUNT 540 a 533 c 502 g 437 t
ORIGIN
1 ccccagcatg gctgccccca cggctgaggg cctggcagct gctgcgccct cgctttcttg
61 acattccctg gcttctgtgc tctcttcccc aggccacccc agcagacatg tttgccaagg
121 cctttcgggt caagtccaac acggccatca aggggtcgga caggagaaag cttcgagctg
181 atgtgacaac tgctttcccc acccttggaa ctgatcaagt ctctgagtta gtacctggaa
241 aggaggagct caacattgtg aagttgtatg ctcacaaagg ggatgcagtg actgtgtacg
301 tgagtggtgg taaccccatc ctctttgaac tggagaaaaa tctgtatcca acagtgtaca
361 cgctgtggtc ctatcctgat cttctgccaa cctttacaac atggcctctg gtgctcgaga
421 aactggtagg gggagcagat ttgatgctgc ctggactggt gatgccccct gctggtctgc
481 ctcaggtaca gaagggcgac ctctgtgcca tttctttggt ggggaacaga gcccctgtag
541 ccattggagt tgcagccatg tccacagctg agatgctcac gtcaggcctg aagggaaggg
601 gcttctctgt gctccacact taccaggacc acttgtggcg gtctggaaac aagtcctctc
661 caccttccat tgctccactg gccctggatt cagcagatct cagtgaagag aaggggtctg
721 tccagatgga ctccaccctg cagggagaca tgaggcacat gaccctggag ggggaagagg
781 agaatgggga ggttcaccag gcacgtgaag acaagtctct ctcagaagcc ccagaagaca
841 ccagcaccag gggcctgaac caagactcca cagatagcaa aacgcttcaa gaacaaatgg
901 atgagctgtt acagcaatgc ttcttacatg ccttgaagtg ccgagtcaaa aaggctgacc
961 tccctttact caccagcact ttccttggca gccacatgtt ctcctgctgc cccgaaggac
1021 gacaactgga cataaagaag tcaagctaca aaaagctctc taagttcctg cagcaaatgc
1081 agcaggagca gattatacag gtgaaggagc tgagcaaagg ggtggagagc attgtggctg
1141 tggactggaa acacccgagg attacatctt tcgtcatacc cgagccctcc ccgacctccc
1201 agactatcca ggagggtagc agggaacagc cctatcaccc tccagatata aaacccctct
1261 actgtgtccc agccagcatg accctgctct tccaggagtc tggccacaag aaggggagct
1321 ttctggaggg cagtgaggtc cgaacgatcg tcattaacta cgccaagaaa aatgacctgg
1381 ttgatgcaga caacaaaaat cttgtgagat tggatcccat cctatgtgac tgcatcttag
1441 agaaaaatga acagcataca gtcatgaagc ttccatggga cagtcttctg accaggtgtt
1501 tggaaaaatt acagcctgcc tatcaagtga cccttcccgg acaagagccc attgtgaaga
1561 aagggagaat ctgtccaatt gacatcaccc tagcacaaag agcgtctaat aaaaaggtga
1621 ccgtggtccg gaacttggag gcctatggtc tggacccata ctcagtggct gccatccttc
1681 agcagcgatg ccaggctagc accaccgtca atcctgcccc tggggccaag gacagccttc
1741 aggtgcagat ccagggaaac caggtccacc acctcggctg gctattgctt gaagagtatc
1801 agctccctcg aaaacacatc caaggtctag aaaaggccct caaacctggc aagaagaagt
1861 gacagactct tttgtctcac gtggtggatc cggtggaaat ccaagctctg ggctggtaat
1921 ttttatgagc attttcagct tttgcaaata caaaatataa ttctttacaa aaataaattt
1981 ttattctaat ctaaaaaaaa aaaaaaaaaa aa
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