LOCUS BC001560 2842 bp mRNA linear HTC 19-NOV-2003
DEFINITION Homo sapiens PTPRF interacting protein, binding protein 1 (liprin
beta 1), mRNA (cDNA clone IMAGE:3453148), with apparent retained
intron.
ACCESSION BC001560
VERSION BC001560.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2842)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2842)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (21-DEC-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 4 Row: g Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 29294626
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..2842
/db_xref="H-InvDB:HIT000086042"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3453148"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_10"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
BASE COUNT 815 a 563 c 589 g 875 t
ORIGIN
1 ggtacctgga actgggagtg atgtcagctc ccagctcggt gcctgcccgg attcctgaca
61 tggtgtagtg caggcagggt ggggaaagga cggggaagga ctcgtgtgct gcgagctggc
121 ggccgggccg gagtgctggg gctttgaact ccgagaggag gtggaccaga acttttggaa
181 ctagtgccgg cggctctcca ccccccagta taaaagaacg tgtggatcac tttgctgagt
241 acatccaaga tttgaagaac tgaaataaat cagctttaaa cctgcttttt aaaaatatct
301 gggttggaat ttgcccctga caaataataa aatgatgagt gatgcaagtg acatgttggc
361 tgcagcgttg gagcagatgg atggtatcat agcaggttct aaggctctgg aatattccaa
421 tgggattttt gattgccaat ctcccacctc tccattcatg ggaagtttgc gagctctgca
481 ccttgtggaa gacctgcgtg gattgttaga gatgatggaa acagatgaga aagaaggctt
541 gagatgccag atcccagatt caacagcaga aacgcttgtt gaatggcttc agagtcaaat
601 ggtagggtct gcctgttcca aattctgtta taaatccttt gttgcttatt ccaaaattta
661 gaacatagaa tagctgatta gaacaagaaa agtttagggc aacacatgtg ctccgatttt
721 attacttaag atatcttaat tttcttttga ctctaaggat aactttttaa aaagtgctat
781 tagtgtacat tttgtaaata ccaacaacag gtcacctgat tctgcccata aaaacagact
841 ggcttttaga ttgtgcctga atgacctact gtggcttaaa tcaaatagtc ctgtaaggga
901 aagaatcttg cacatgatag atgatttctc agtcatattg ggttattcac cataaaggat
961 ccaatagcaa ttctaaatgg aaagcatgat gaaagacttt caaaaagcaa caggatttac
1021 agcagtattt gaccggaagt gccatctagt ggtttatggc aatcatttca gttccagttc
1081 ccgaattaaa ttgtggagtt gggcctttaa cccatttatg cgcagtgttc cattattgga
1141 acgctaagct tgtgggagtt atttatatcc tgctcaaagt catcgccaag gtctcattta
1201 aaaaaaaaaa tcacaacctc cagcataaat gggttaatgg tgttactcac tgaacaatga
1261 ggccgctttc taggcatcct tctcaaaaat tgaagatgtg gcagagctac cctttgtctg
1321 ggcacggttg gaaataccgt ggttttgatc tgtgatgaat acataaaatc taaagaatgt
1381 cacaaaaaca gattcagtgg aggacagagg aaaggagata ttttgtgctt aaaggatatt
1441 caattttcag taagatgcac tcatatgctt atgagttaac tgtgttgata taaaagctaa
1501 taagaattgt atgaaagaat cgtgatctac tttatgatct gtggtagaca tgaaaaccgc
1561 ttgctttggg aaccttaaga gtacatccta cagctaaaac attttcatat gatgtgacac
1621 aaatattaga gctcccagcc agtcctgtgc tgaatactct gtgttcccac ctggtttacc
1681 tctgcgtttc tgagtgcaaa taatacaacc catcctttag tggtggtgca gctacacaaa
1741 cttgataatt ggatacattt tacttgttaa aacacataat gccttactat tatacttcat
1801 acttgatctg caaatttctt ttccagagat tgaagggtcc aggtttgctg atttcgttgg
1861 ggattgcttc atgctcagca gttggtgttt cctggcatat tccttagtct atttcaatgt
1921 cctatctcac cccttcttta ctgcatgttc ttctgaccat ttagcatgca gtgaaaaagg
1981 aatttactat tgttagaaga acgtatttct atcccacacc cagaggccac caatggcaat
2041 agtagccgaa gcgtacctgt agttcagctt ttgacatgtg tgtaaaacat gtccattaac
2101 atgtgcttaa tctgttctgt gaaagtattt tcagaaatga taaaaagtaa tgatggttac
2161 atctgaatat aagttagatc atgacactca ctcctttttt cagaaactac cagtggcatc
2221 acatcttact cagagtaaaa accacagtgg gcttactgtg ggctgcaagg cctcgtagga
2281 tttgcccccc atgactttct gacttcatct cttgtcacac atctccttat tcgctccacg
2341 cgaagcacag tggctttttc actgattctt aaacatgcca ggtacactgg cctcagagcc
2401 tttgcactgg cttttccagg cactggcttt tcactctgcc tggaaagctc tttcgccaga
2461 tatttgcatg gctagctccc tcacattctc ctggtgttta ctcaaaagtc atgctctcag
2521 tgaggccttg tatcaccacc ctaactaaaa ttatacccat ttattccttg tcttacatct
2581 ccctgcttat tttgttctta gcattcacca ttttcttatg tgcaacgtgt ttgtgatgtt
2641 tatatcattt attttctgtc tttccaattg gaatgtaagc atcaggaatc agatttttgc
2701 ccttatttta aaaaaattac tgtatccctg gtgcttagaa gaatgcctgg ctcagtagtt
2761 atatttgtaa tgaatgatgc tccatgaatg ataaagtgga ttgcatgttt gaataaaaaa
2821 aaaaaaaaaa aaaaaaaaaa aa
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