LOCUS BC001543 2082 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens homeobox C11, mRNA (cDNA clone MGC:4906
IMAGE:3462682), complete cds.
ACCESSION BC001543
VERSION BC001543.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2082)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2082)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (21-DEC-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 4 Row: d Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 24497534.
FEATURES Location/Qualifiers
source 1..2082
/db_xref="H-InvDB:HIT000030482"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4906 IMAGE:3462682"
/tissue_type="Cervix, carcinoma"
/clone_lib="NIH_MGC_12"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2082
/gene="HOXC11"
/gene_synonym="MGC4906"
/db_xref="GeneID:3227"
/db_xref="HGNC:HGNC:5123"
/db_xref="MIM:605559"
CDS 98..1012
/gene="HOXC11"
/gene_synonym="MGC4906"
/codon_start=1
/product="homeobox C11"
/protein_id="AAH01543.1"
/db_xref="GeneID:3227"
/db_xref="HGNC:HGNC:5123"
/db_xref="MIM:605559"
/translation="MFNSVNLGNFCSPSRKERGADFGERGSCASNLYLPSCTYYMPEF
STVFSFLPQAPSRQISYPYSAQVPPVREVSYGLEPSGKWHHRNSYSSCYAAADELMHR
ECLPPSTVTEILMKNEGSYGGHHHPSAPHATPAGFYSSVNKNSVLPQAFDRFFDNAYC
GGGDPPAEPPCSGKGEAKGEPEAPPASGLASRAEAGAEAEAEEENTNPSSSGSAHSVA
KEPAKGAAPNAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQV
KIWFQNRRMKEKKLSRDRLQYFSGNPLL"
BASE COUNT 472 a 619 c 536 g 455 t
ORIGIN
1 ctaagacgga taacgcgtca tctcgccttc ccaaattttc ccccctcgct agaccgggtc
61 caaaacctcc atccggagcc ggcaggagag gagaacgatg tttaactcgg tcaacctggg
121 caacttctgc tcgccgtcgc gcaaggagag gggcgcagat ttcggcgagc gagggagctg
181 cgcctccaac ctctatctgc ccagttgcac ttactacatg cccgagttct ccacggtctt
241 ctccttcctg ccccaggccc cctctcgtca gatctcctat ccctactcgg cccaagtgcc
301 cccggtccgg gaggtctcct acggcctgga gccatccggc aagtggcacc atcggaacag
361 ctactcctcc tgctatgcgg cggccgacga gcttatgcac cgggagtgcc tgcctccttc
421 caccgtcacc gagatcctca tgaaaaacga aggctcctac ggcggccacc accaccccag
481 cgccccgcac gcaacccccg ccggcttcta ctcctcagtc aacaagaaca gcgtcctgcc
541 tcaagccttc gaccgtttct tcgacaacgc ctactgcggt ggcggcgacc cgcccgccga
601 gcccccctgc tccggcaagg gcgaggccaa gggggagccc gaggcacccc cggcctcggg
661 actggcgtcc cgggctgagg cgggtgccga ggcggaggct gaggaggaga acacaaatcc
721 cagctcgtcc ggttcagccc actccgtggc caaggagccg gccaaaggag ccgcccccaa
781 cgccccccgc acccgcaaga agcgctgccc ttattcgaaa ttccagatcc gggaactgga
841 gcgagagttt ttcttcaacg tgtatatcaa caaagagaag cggctgcagc tgtcccggat
901 gctgaacctg acggaccgac aagtgaaaat ttggtttcag aacagaagga tgaaagaaaa
961 gaaactgagc agagaccggc tgcagtattt ctcgggaaat cctctgctgt aacctgcaga
1021 ccgggccctt ttgggggcgg ggggagggga aaattatttt attttatttt tattttttat
1081 tttctaactc gtcttctttc cgccggtgga aaactggact gtggccaggg ctggccccca
1141 ccgctgtggc cggcactcca ttccggaacc tcctggaccc tctatctgac tctcgctgtg
1201 ggacagggac cgggcctgga aagggggtga agggaagtgt ctgatgcacg gcgagtgaac
1261 accgttggcg ccgaggccaa gactttgatt taaaagaaaa cacacctcgg cgacaatgtc
1321 ttgctgctcg gattaggtgg gggaggggcg acagtagtga gcgcctgagc cgaacaatcc
1381 tcgaactaaa agccttccct tgcccatgtg aaaagatccg ctaagacagc atgtctgcca
1441 gcggaaactt ctcgagctcc cccctctacc ccgccccacc ttgccccact actttagggg
1501 gcagctaaat gtgatcctgc cttgctgtga aatttctgta ccttcaacct ggtgttaggt
1561 gtgcaaagtc cgtgtcctac ctccgtcttc gccaaggccc cgcccgagcc tagttgttct
1621 ccccctgaat gtgtagaacc ttcctttgaa atttcttaat cggtgcattg aggtttccac
1681 atctttttcc aagcagtgcc ccacttcatg gatttatagc tatagtctat gcagtcgtta
1741 cctctttttt tttttttttt taagaaaatt gaagattggg gtggtggagg cagtagggag
1801 atgggattgg gcacctcccc cgtgctgggg cctggatttt tgtaaataaa tttcccaagc
1861 gtttctttcc acctggaggg aaaggggggg acgcccccag tgagattcaa atcacgcatc
1921 tctactcctc tgcgtgagtg cgtgtgtaca tgtgcactcc ccaccctgct cccttcccag
1981 agggattgct gtgaaatttt tttggtggca aataaagata aatttcattc tgttcaaaaa
2041 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa
//