LOCUS BC001525 1187 bp mRNA linear HUM 12-FEB-2004 DEFINITION Homo sapiens TBC1 domain family, member 16, mRNA (cDNA clone IMAGE:3050107), partial cds. ACCESSION BC001525 VERSION BC001525.2 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1187) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1187) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (21-DEC-2000) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 19, 2003 this sequence version replaced BC001525.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC/DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 3 Row: l Column: 22 This clone was selected for full length sequencing because it passed the following selection criteria: Hexamer frequency ORF analysis. FEATURES Location/Qualifiers source 1..1187 /db_xref="H-InvDB:HIT000086027" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:3050107" /tissue_type="Skin, melanotic melanoma." /clone_lib="NIH_MGC_20" /lab_host="DH10B-R" /note="Vector: pOTB7" gene <1..1187 /gene="TBC1D16" /gene_synonym="FLJ20748" /gene_synonym="MGC25062" /db_xref="GeneID:125058" CDS <1..904 /gene="TBC1D16" /gene_synonym="FLJ20748" /gene_synonym="MGC25062" /codon_start=2 /product="TBC1D16 protein" /protein_id="AAH01525.2" /db_xref="GeneID:125058" /translation="ESGGRRHSGPGRREPQRETDFKMKVAPDKTCMQFSIRRPKLPSS ETHPEESMYKRLGVSAWLNHLNELGQVEEEYKLRKAIFFGGIDVSIRGEVWPFLLRYY SHESTSEEREALRLQKRKEYSEIQQKRLSMTPEEHRAFWRNVQFTVDKDVVRTDRNNQ FFRGEDNPNVESMRRILLNYAVYNPAVGYSQGMSDLVAPILAEVLDESDTFWCFVGLM QNTIFVSSPRDEDMEKQLLYLRELLRLTHVRFYQHLVSLGEDGLQMLFCHRWLLLCFK REFPEAEALRIWEACWAHYQGADV" misc_feature 251..883 /gene="TBC1D16" /gene_synonym="FLJ20748" /gene_synonym="MGC25062" /note="TBC; Region: Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases" /db_xref="CDD:smart00164" BASE COUNT 280 a 324 c 364 g 219 t ORIGIN 1 agagagtggg gggcggcggc acagtgggcc ggggaggaga gagccgcaga gggaaaccga 61 ttttaagatg aaggtcgccc ccgataagac atgcatgcag ttctccatcc gccgccccaa 121 gctgccgtcc tccgagacgc accccgagga gagcatgtac aagaggctcg gcgtctccgc 181 ctggctcaac cacctgaatg agctgggcca ggtggaggag gagtacaagc tgcggaaggc 241 cattttcttt ggcggtattg atgtgtcaat ccgcggggag gtctggccct tcctgctgcg 301 ctattacagc cacgagtcca cgtcggagga gcgggaggcg ctgcggctgc agaagcgaaa 361 ggagtactct gagatccagc agaaaaggct ctccatgact cccgaggagc acagagcgtt 421 ctggcgtaat gtgcagttca ctgtggacaa agacgtggtc cggacagatc ggaacaacca 481 gttcttccgg ggggaagaca atcccaatgt ggagagcatg aggaggatcc tgctgaacta 541 cgccgtgtac aaccctgccg tcggctattc ccaagggatg tcggacctgg tggcgcccat 601 cttggccgag gtcctggatg agtcagacac cttctggtgc tttgtgggtt tgatgcagaa 661 cacgatcttc gtcagctcac cccgggacga ggacatggag aaacaactgc tgtacctgcg 721 cgagctgctg cggctgacgc acgtgcgctt ctaccagcac ctggtctcgc tgggcgagga 781 cggcctgcag atgctcttct gccaccgctg gctccttctg tgcttcaagc gggagttccc 841 cgaggccgaa gcgctgcgga tctgggaggc ctgctgggcc cactaccagg gggctgatgt 901 ctgatgaaag cgagtctgaa gccaccgagt gccggtacca cacgccacct ttgcatgcgg 961 tcatcggctc gcccctgtcc cgggtctagg tttccctcct ggctcagcct gctggacgtg 1021 gacgtgcagg gtggacgatc tgcattaacg aagggaagca cggcatggac ggtctgagag 1081 gcttcattcc caccactccc gaattaaaaa aaatcgtgcc tcattgcacg ttttcccagt 1141 gaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa //