LOCUS BC001294 1275 bp mRNA linear HUM 19-MAR-2009 DEFINITION Homo sapiens chromosome 17 open reading frame 48, mRNA (cDNA clone MGC:5294 IMAGE:3452502), complete cds. ACCESSION BC001294 VERSION BC001294.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1275) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1275) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (11-DEC-2000) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Sep 16, 2003 this sequence version replaced BC001294.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 4 Row: g Column: 11 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 37059747 The stop codon of the CDS annotated on this record is located > 55 bases upstream of a splice junction, and therefore the mRNA is predicted to be subject to nonsense-mediated mRNA decay (NMD). FEATURES Location/Qualifiers source 1..1275 /db_xref="H-InvDB:HIT000030299" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:5294 IMAGE:3452502" /tissue_type="Placenta, choriocarcinoma" /clone_lib="NIH_MGC_10" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1275 /gene="C17orf48" /gene_synonym="MDS006" /gene_synonym="NBLA03831" /db_xref="GeneID:56985" /db_xref="HGNC:HGNC:30925" CDS 31..648 /gene="C17orf48" /gene_synonym="MDS006" /gene_synonym="NBLA03831" /codon_start=1 /product="C17orf48 protein" /protein_id="AAH01294.1" /db_xref="GeneID:56985" /db_xref="HGNC:HGNC:30925" /translation="MDDKPNPEALSDSSERLFSFGVIADVQFADLEDGFNFQGTRRRY YRHSLLHLQGAIEDWNNESSMPCCVLQLGDIIDGYNAQYNASKKSLELVMDMFKRLKV PVHHTWGNHEFYNFSREYLTHSKLNTKFLEDQIVHHPETMPSEDYYAYHFVPFPKFRF ILLDAYDLSVLGVDQSSPKYEQCMKILREHNPNTELNSPQGELFL" BASE COUNT 409 a 248 c 260 g 358 t ORIGIN 1 gggccggcgc acgaaacctg tttggaggtt atggatgata aacccaatcc tgaagcccta 61 agtgacagtt cagagcgtct tttctccttt ggcgtcatcg cagatgttca atttgcagac 121 ttagaagatg gctttaattt ccaaggaacc aggcggcgat actacagaca tagtcttctt 181 cacttacagg gtgccattga agactggaat aatgaaagca gcatgccctg ttgtgtcctt 241 cagcttggag atatcatcga tggatataat gcacagtata atgcatccaa aaagtcccta 301 gaacttgtta tggacatgtt caagaggctt aaagttccag ttcatcatac atggggaaac 361 catgaattct ataacttcag tagagagtat ttaacacact ctaaacttaa cactaagttt 421 ctagaagatc agattgtaca tcatcctgag accatgcctt cagaagatta ttatgcttat 481 cattttgtac cattccctaa attccggttc attttacttg atgcatatga cttgagtgtc 541 ttgggcgtgg atcagtcttc tccaaaatac gagcagtgta tgaagatatt gagggagcac 601 aatccaaata cggaactgaa tagtcctcaa ggtgaattat tcctttgagc tgagaatcta 661 atagattgtc tttaaattct tcagctacct tttattcagc aggaagatgg acaattaagg 721 actttctgag ccccagtttg tccagtttaa tggaggattc agccaagaac agctaaactg 781 gttgaatgaa gtgctaacat tctctgacac aaaccaagaa aaggtggtga ttgccatctt 841 cccatttacc cggacgcctc tgacaatgtg tgcctggcct ggaactacag agatgccctg 901 gcagtcattt ggtctcatga gtgtgtggtg tgtttctttg ctggtcacac ccatgatggt 961 ggctactctg aggatccttt tggtgtatac cacgtcaacc tagaaggagt tattgaaaca 1021 gctccagaca gccaagcctt tggcacagtt catgtctatc ctgacaaaat gatgttgaaa 1081 gggagaggca gagttccaga tagaattatg aattacaaga aaggaagagc cttccattgt 1141 tagtctaatt tattttaact tgatagaaaa tgagctttgt gtttgtccct cctaaacaaa 1201 aaaataaaaa tcctctgtct catcaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 1261 aaaaaaaaaa aaaaa //