LOCUS BC001276 2006 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens tetratricopeptide repeat domain 4, mRNA (cDNA clone
MGC:5097 IMAGE:3462738), complete cds.
ACCESSION BC001276
VERSION BC001276.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2006)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2006)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-DEC-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 4 Row: h Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 39652617.
FEATURES Location/Qualifiers
source 1..2006
/db_xref="H-InvDB:HIT000030282"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:5097 IMAGE:3462738"
/tissue_type="Cervix, carcinoma"
/clone_lib="NIH_MGC_12"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2006
/gene="TTC4"
/gene_synonym="MGC5097"
/db_xref="GeneID:7268"
/db_xref="HGNC:HGNC:12394"
/db_xref="MIM:606753"
CDS 27..1190
/gene="TTC4"
/gene_synonym="MGC5097"
/codon_start=1
/product="tetratricopeptide repeat domain 4"
/protein_id="AAH01276.1"
/db_xref="GeneID:7268"
/db_xref="HGNC:HGNC:12394"
/db_xref="MIM:606753"
/translation="MEQPGQDPTSDDVMDSFLEKFQSQPYRGGFHEDQWEKEFEKVPL
FMTRAPSEIDPRENPDLACLQSIIFDEERSPEEQAKTYKDEGNDYFKEKDYKKAVISY
TEGLKKKCADPDLNAVLYTNRAAAQYYLGNFRSALNDVTAARKLKPCHLKAIIRGALC
HLELKHFAEAVNWCDEGLQIDAKEKKLLEMRAKADKLKRIEQRDVRKANLKEKKERNQ
NEALLQAIKARNIRLSEAACEDEDSASEGLGELFLDGLSTENPHGARLSLDGQGRLSW
PVLFLYPEYAQSDFISAFHEDSRFIDHLMVMFGETPSWDLEQKYCPDNLEVYFEDEDR
AELYRVPAKSTLLQVLQHQRYFVKALTPAFLVCVGSSPFCKNFLRGRKVYQIR"
BASE COUNT 547 a 456 c 502 g 501 t
ORIGIN
1 ccgggctgga aggcagggca tcagctatgg aacaacctgg gcaggatccc acctcagacg
61 acgtcatgga ctcgttcctg gaaaagttcc agagccagcc ttaccgtggc ggctttcatg
121 aggaccagtg ggagaaggaa tttgaaaagg tccccctatt tatgacgaga gcgccatcag
181 aaattgatcc cagggagaat cctgacttgg cttgtctcca gtcaattatt tttgatgagg
241 agcgttctcc agaagaacag gccaagacct ataaagatga gggcaatgat tactttaaag
301 aaaaagacta caagaaagct gtaatttcat acactgaagg cttaaagaag aaatgtgcag
361 atcctgattt gaatgctgtc ctttatacca accgggcagc agcacagtac tatctgggca
421 attttcgttc tgctctcaat gatgtgacag ctgccagaaa gctaaaaccc tgccacctca
481 aagcaataat aagaggtgcc ttatgccatc tggaactgaa acactttgcc gaggccgtga
541 actggtgtga tgagggactg caaatagatg ccaaagagaa gaagcttctg gaaatgaggg
601 ctaaagcaga caagctgaag cgaattgaac agagggatgt gaggaaagcc aacttgaaag
661 aaaagaagga gaggaatcag aatgaggctt tactccaggc catcaaggct aggaatatca
721 ggctctcaga agctgcctgt gaggatgaag attcagcctc agaaggtcta ggtgagcttt
781 tcctggatgg actcagcact gagaaccccc atggagccag gctgagtcta gatggccagg
841 gcaggctgag ctggcctgtg ctctttctgt acccagagta tgcccagtcg gacttcatct
901 ctgcttttca tgaggactcc aggtttattg atcatctaat ggtgatgttt ggtgaaacac
961 cctcttggga cctagagcaa aaatattgcc ctgataattt ggaggtctac tttgaggatg
1021 aggacagggc agaactatac cgggtgcctg ccaagagcac cttgctacag gttctacagc
1081 accagaggta ctttgtaaaa gccctgacac cagcattttt ggtctgtgta ggatcctctc
1141 ctttttgcaa gaattttctc cgggggagaa aggtgtacca gatacgatga ctaagccagg
1201 gcccctggat ctcctccctt accctcctct gctgggaacc tagcacacct gaatcagctg
1261 gacatactgc tggagtccag tgctttcttt ccgtcaccct ggggatagtc cttcctggca
1321 tcgtggtggg ggaggagcct ctggcttccc taaactgcag cctctctggc tggtcttcac
1381 tttcctcagt tgatataaaa ctctgggtct tggccatgat gtccttggac tccatcgcta
1441 aagggaccat ctgctgcagt taccacagca actgacctga gcggcaccct ggtctgtgga
1501 gatggactca ggatccagtg acatgattct gaacttttgt ggagtttgac accttagaga
1561 agctacccct caaactgcac atctacacac aaacaaacaa tgcataggat tccaaggctt
1621 taaagctgag agaccctggc ctcaagttat ttcatgcgca cagagggaag ccatgtgggg
1681 ttgctgaaga tgccttgagg tgaaatgggg gcaggaaagc cacatcttgc tctgcattta
1741 taaagaccgt acaaactgag atccttggta cccctaaaaa gattgccaat tttcttcatc
1801 tttgccatat ggaggactgt gacagacttt ggacagtggc ctcttgagtt cctctgcagt
1861 tttgacattt aggattttgt gtcttttaaa ctggaaaatc ttctagcatg ttgggttgtt
1921 acagagtata tttttgtctg cagctgtttg ttgccccatt cctaagagga gtttatccat
1981 cctgaaaaaa aaaaaaaaaa aaaaaa
//