LOCUS BC001230 1706 bp mRNA linear HUM 17-NOV-2006
DEFINITION Homo sapiens anterior pharynx defective 1 homolog A (C. elegans),
mRNA (cDNA clone MGC:4880 IMAGE:3457593), complete cds.
ACCESSION BC001230
VERSION BC001230.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1706)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1706)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-DEC-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC001230.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 4 Row: o Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7705786.
FEATURES Location/Qualifiers
source 1..1706
/db_xref="H-InvDB:HIT000030238"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4880 IMAGE:3457593"
/tissue_type="Cervix, carcinoma"
/clone_lib="NIH_MGC_12"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1706
/gene="APH1A"
/gene_synonym="6530402N02Rik"
/gene_synonym="APH-1A"
/gene_synonym="CGI-78"
/db_xref="GeneID:51107"
/db_xref="HGNC:HGNC:29509"
/db_xref="MIM:607629"
CDS 170..967
/gene="APH1A"
/gene_synonym="6530402N02Rik"
/gene_synonym="APH-1A"
/gene_synonym="CGI-78"
/codon_start=1
/product="anterior pharynx defective 1 homolog A (C.
elegans)"
/protein_id="AAH01230.1"
/db_xref="GeneID:51107"
/db_xref="HGNC:HGNC:29509"
/db_xref="MIM:607629"
/translation="MGAAVFFGCTFVAFGPAFALFLITVAGDPLRVIILVAGAFFWLV
SLLLASVVWFILVHVTDRSDARLQYGLLIFGAAVSVLLQEVFRFAYYKLLKKADEGLA
SLSEDGRSPISIRQMAYVSGLSFGIISGVFSVINILADALGPGVVGIHGDSPYYFLTS
AFLTAAIILLHTFWGVVFFDACERRRYWALGLVVGSHLLTSGLTFLNPWYEASLLPIY
AVTVSMGLWAFITAGGSIRSIQRSLLCRRQEDSRVMVYSALRIPPED"
BASE COUNT 300 a 453 c 474 g 479 t
ORIGIN
1 cccacgcgtc cgggttcccc cccttcccct tccccggggt ctgggggtga cattgcaccg
61 cgcccctcgt ggggtcgcgt tgccacccca cgcggactcc ccagctggcg cgcccctccc
121 atttgcctgt cctggtcagg cccccacccc ccttcccacc tgaccagcca tgggggctgc
181 ggtgtttttc ggctgcactt tcgtcgcgtt cggcccggcc ttcgcgcttt tcttgatcac
241 tgtggctggg gacccgcttc gcgttatcat cctggtcgca ggggcatttt tctggctggt
301 ctccctgctc ctggcctctg tggtctggtt catcttggtc catgtgaccg accggtcaga
361 tgcccggctc cagtacggcc tcctgatttt tggtgctgct gtctctgtcc ttctacagga
421 ggtgttccgc tttgcctact acaagctgct taagaaggca gatgaggggt tagcatcgct
481 gagtgaggac ggaagatcac ccatctccat ccgccagatg gcctatgttt ctggtctctc
541 cttcggtatc atcagtggtg tcttctctgt tatcaatatt ttggctgatg cacttgggcc
601 aggtgtggtt gggatccatg gagactcacc ctattacttc ctgacttcag cctttctgac
661 agcagccatt atcctgctcc ataccttttg gggagttgtg ttctttgatg cctgtgagag
721 gagacggtac tgggctttgg gcctggtggt tgggagtcac ctactgacat cgggactgac
781 attcctgaac ccctggtatg aggccagcct gctgcccatc tatgcagtca ctgtttccat
841 ggggctctgg gccttcatca cagctggagg gtccatccga agtattcagc gcagcctctt
901 gtgccgacgg caggaggaca gtcgggtgat ggtgtattct gccctgcgca tcccacccga
961 ggactgaggg aacctagggg ggacccctgg gcctggggtg ccctcctgat gtcctcgccc
1021 tgtatttctc catctccagt tctggacagt gcaggttgcc aagaaaaggg acctagttta
1081 gccattgccc tggagatgaa attaatggag gctcaaggat agatgagctc tgagtttctc
1141 agtactccct caagactgga catcttggtc tttttctcag gcctgagggg gaaccatttt
1201 tggtgtgata aataccctaa actgcctttt tttctttttt gaggtggggg gagggaggag
1261 gtatattgga actcttctaa cctccttggg ctatattttc tctcctcgag ttgctcctca
1321 tggctgggct catttcggtc cctttctcct tggtcccaga ccttggggga aaggaaggaa
1381 gtgcatgttt gggaactggc attactggaa ctaatggttt taacctcctt aaccaccagc
1441 atccctcctc tccccaaggt gaagtggagg gtgctgtggt gagctggcca ctccagagct
1501 gcagtgccac tggaggagtc agactaccat gacatcgtag ggaaggaggg gagatttttt
1561 tgtagttttt aattggggtg tgggaggggc ggggaggttt tctataaact gtatcatttt
1621 ctgctgaggg tggagtgtcc catcctttta atcaaggtga ttgtgatttt gactaataaa
1681 aaagaatttg taaaaaaaaa aaaaaa
//