LOCUS BC001215 1883 bp mRNA linear HUM 07-OCT-2003
DEFINITION Homo sapiens CDK5 regulatory subunit associated protein 1, mRNA
(cDNA clone MGC:727 IMAGE:3535564), complete cds.
ACCESSION BC001215
VERSION BC001215.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1883)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1883)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (11-DEC-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield,
Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin,
Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo
Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven
Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline
Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott,
Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy,
George Yang, Scott Zuyderduyn, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 8 Row: c Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 28872783.
FEATURES Location/Qualifiers
source 1..1883
/db_xref="H-InvDB:HIT000030227"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:727 IMAGE:3535564"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1883
/gene="CDK5RAP1"
/gene_synonym="C20orf34"
/gene_synonym="C42"
/gene_synonym="CGI-05"
/gene_synonym="HSPC167"
/db_xref="GeneID:51654"
CDS 92..1624
/gene="CDK5RAP1"
/gene_synonym="C20orf34"
/gene_synonym="C42"
/gene_synonym="CGI-05"
/gene_synonym="HSPC167"
/codon_start=1
/product="CDK5RAP1 protein"
/protein_id="AAH01215.1"
/db_xref="GeneID:51654"
/translation="MHPLQCVLQVQRSLGWGPLASVSWLSLRMCRAHSSLSSTMCPSP
ERQEDGARKDFSSRLAAGPTFQHFLKSASAPQEKLSSEVEDPPPYLMMDELLGRQRKV
YLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRLH
QLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPQLLAVA
ESGQQAANVLLSLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERS
RPIASILEEVKKLSEQVLQLIHERDNICKQIHLPAQSGSSRVLEAMRRGYSREAYVEL
VHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRAY
HRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLVLVEGLSKRSATDLCGRN
DGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTLRGHVLCRTTLRDSSA
YC"
misc_feature 389..1585
/gene="CDK5RAP1"
/gene_synonym="C20orf34"
/gene_synonym="C42"
/gene_synonym="CGI-05"
/gene_synonym="HSPC167"
/note="MiaB; Region: 2-methylthioadenine synthetase
[Translation, ribosomal structure and biogenesis]"
/db_xref="CDD:COG0621"
BASE COUNT 505 a 429 c 521 g 428 t
ORIGIN
1 cctgtgaggg gatccgactt gccggcagaa cttacgctgc gggaccccgg gcactgttgc
61 tgctgcggga gactgtgggc tgtttagtgc catgcaccct ttacagtgtg tcctccaagt
121 gcagaggtct ctggggtggg gaccattggc ctctgtgtct tggctgtcgc tgaggatgtg
181 cagggcacac agcagtctct ctagtaccat gtgtcccagt ccagagaggc aggaggatgg
241 agctcggaag gatttcagct ccaggctggc tgctggaccg acttttcaac attttttaaa
301 aagtgcctca gctcctcagg agaagctgtc ttcagaagtg gaagacccac ctccctatct
361 catgatggat gaacttcttg gaaggcagag aaaagtctac ctcgagacct atggctgcca
421 gatgaatgtg aatgacacag agatagcctg gtccatctta cagaagagtg gctacctgcg
481 gaccagtaac ctccaagagg cagatgtgat tctccttgtc acgtgctcta tcagggagaa
541 ggctgagcag accatctgga accgtttaca tcagcttaaa gccttgaaga caaggcggcc
601 ccgctcccgg gttcctctga ggattggaat tctaggctgc atggctgaga ggttgaagga
661 ggagattctc aacagagaga aaatggtaga tattttggct ggtcctgatg cctaccggga
721 ccttccccag ctgctggctg ttgctgagtc gggccagcaa gctgccaacg tgctgctctc
781 tctggacgag acctatgctg atgtcatgcc agtccagaca agcgccagtg ccacgtctgc
841 ctttgtgtca atcatgcgag gctgtgacaa catgtgtagc tactgcattg ttcctttcac
901 ccggggcagg gagaggagtc ggcctattgc ctccattcta gaggaagtga agaagctttc
961 tgagcaggtt ctgcagctga ttcatgagag agataacatc tgtaaacaga tccacctgcc
1021 agcccagagt ggaagcagcc gtgtgttgga ggccatgcgg aggggatatt caagagaagc
1081 ttatgtggag ttagttcacc atattagaga atctattcca ggtgtgagcc tcagcagcga
1141 tttcattgct ggcttttgtg gtgagacgga ggaagatcac gtccagacag tctctttgct
1201 ccgggaagtt cagtacaaca tgggcttcct ctttgcctac agcatgagac agaagacacg
1261 ggcatatcat aggctgaagg atgatgtccc ggaagaggta aaattaaggc gtttggagga
1321 actcatcact atcttccgag aagaagcaac aaaagccaat cagacctctg tgggctgtac
1381 ccagttggtg ctagtggaag ggctcagtaa acgctctgcc actgacctgt gtggcaggaa
1441 tgatggaaac cttaaggtga tcttccctga tgcagagatg gaggatgtca ataaccctgg
1501 gctcagggtc agagcccagc ctggggacta tgtgctggtg aagatcacct cagccagttc
1561 tcagacactt aggggacatg ttctctgcag gaccactctg agggactctt ctgcatattg
1621 ctgacctgag aggatggcct cagagctgac ttgggcaatc ctccccaaca ggaaggggag
1681 acattgcctg ccactgagga aacaggtcat gaaggtggag ataagctgca aggggcgaag
1741 caactttatg tcagtggaaa acgtgtctct ttaaagctgc tatgtgaaca gcttttacag
1801 tcattaaatt tacctaaact aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1861 aaaaaaaaaa aaaaaaaaaa aaa
//