LOCUS BC001195 1559 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens transmembrane protein 38A, mRNA (cDNA clone MGC:3169
IMAGE:3355479), complete cds.
ACCESSION BC001195
VERSION BC001195.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1559)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1559)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-DEC-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 6 Row: b Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13129059.
FEATURES Location/Qualifiers
source 1..1559
/db_xref="H-InvDB:HIT000030214"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3169 IMAGE:3355479"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1559
/gene="TMEM38A"
/gene_synonym="MGC3169"
/db_xref="GeneID:79041"
/db_xref="HGNC:HGNC:28462"
CDS 8..907
/gene="TMEM38A"
/gene_synonym="MGC3169"
/codon_start=1
/product="transmembrane protein 38A"
/protein_id="AAH01195.1"
/db_xref="GeneID:79041"
/db_xref="HGNC:HGNC:28462"
/translation="MELLSALSLGELALSFSRVPLFPVFDLSYFIVSILYLKYEPGAV
ELSRRHPIASWLCAMLHCFGSYILADLLLGEPLIDYFSNNSSILLASAVWYLIFFCPL
DLFYKCVCFLPVKLIFVAMKEVVRVRKIAVGIHHAHHHYHHGWFVMIATGWVKGSGVA
LMSNFEQLLRGVWKPETNEILHMSFPTKASLYGAILFTLQQTRWLPVSKASLIFIFTL
FMVSCKVFLTATHSHSSPFDALEGYICPVLFGSACGGDHHHDNHGGSHSGGGPGAQHS
AMPAKSKEELSEGSRKKKAKKAD"
BASE COUNT 328 a 460 c 416 g 355 t
ORIGIN
1 gggcgccatg gagctgctct cggcgctgag cctgggcgaa ctggcgctca gcttctcgcg
61 ggtgccgctc ttccccgtct tcgacctcag ttacttcatc gtctccatcc tctacctcaa
121 gtatgagcca ggagcagtcg aactgtcccg gcgccacccc atcgcgtcct ggctgtgcgc
181 catgctgcat tgcttcggga gctacatcct ggctgatctg ctccttgggg agccactgat
241 cgattacttc agcaacaact ccagcatcct gctggcctca gctgtctggt acttgatttt
301 cttctgcccc ctggacctct tctacaagtg tgtctgcttc ctgcctgtga aactcatctt
361 cgtggccatg aaggaggtgg tgcgagtccg caagatcgcg gtgggcatcc atcacgccca
421 tcaccactac caccacgggt ggttcgtcat gattgcaact gggtgggtca aaggttctgg
481 tgtcgccctc atgtccaact ttgagcagct gctccgaggg gtctggaagc cagagaccaa
541 cgagatcctg cacatgtctt tccccaccaa ggccagcctg tatggagcca tcctcttcac
601 cctccagcag acccgctggc tcccagtgtc caaagccagc ctcatcttca tcttcacctt
661 gttcatggtg tcctgtaagg tgtttctgac agccacccac tcacacagct ccccctttga
721 tgccctggag ggctacatct gccccgtgct gtttggttcg gcctgcgggg gtgaccatca
781 ccacgacaac catggtgggt cccacagcgg tggtgggcca ggagctcagc attcggccat
841 gcccgccaag tccaaggagg agttgagcga gggctccagg aagaagaagg ccaagaaggc
901 ggattagggg gtggcccaag gggcaccggg gagaggaccc ggacccagga ccctctgagc
961 tgggaggctt cctgcgctca gatctatcct ttcctggcct tgacttcccc atctgcaaat
1021 cagggtcatt ggctcaccct ccagggctga cgtgggggtt gagatatggg gatgaggatg
1081 aagaactttt gtagaaatcg gggttccctc tttctctctg ccaggacccc atagagtcac
1141 agcttttgga ggggttcaca gaatcctggc agcagctcca gtcaagaatg tcactggttg
1201 gcatgatatt cttagttcta tttttccttc tttaaaattg catcttgacc aggcacagtg
1261 gctcatgcct ataatcctag cactttggga ggccgaggcg ggcagatcac ctgaggtcag
1321 gagttcaaga ccagcttggc caacatggtg aaaccccatc tctaccaaaa atacaaaaat
1381 tagccagacg tggtggtgca cgcctttaat cccagctact cgggaggctg aggcaggaga
1441 atcacatgaa tccaggaggt ggaggttgca gtgagctgag atcttcccac tgcactccag
1501 cctggccaat aagacctgtc tccagcaaga ccctgtctca aaaaaaaaaa aaaaaaaaa
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