LOCUS BC001187 1309 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis), mRNA (cDNA clone MGC:3149 IMAGE:3354130), complete cds. ACCESSION BC001187 VERSION BC001187.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1309) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1309) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (11-DEC-2000) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 6 Row: h Column: 7 This clone was selected for full length sequencing because it passed the following selection criteria: Hexamer frequency ORF analysis. FEATURES Location/Qualifiers source 1..1309 /db_xref="H-InvDB:HIT000030207" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:3149 IMAGE:3354130" /tissue_type="Eye, retinoblastoma" /clone_lib="NIH_MGC_16" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1309 /gene="COPS5" /gene_synonym="CSN5" /gene_synonym="JAB1" /gene_synonym="MGC3149" /gene_synonym="MOV-34" /gene_synonym="SGN5" /db_xref="GeneID:10987" /db_xref="HGNC:HGNC:2240" /db_xref="MIM:604850" CDS 136..1140 /gene="COPS5" /gene_synonym="CSN5" /gene_synonym="JAB1" /gene_synonym="MGC3149" /gene_synonym="MOV-34" /gene_synonym="SGN5" /codon_start=1 /product="COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis)" /protein_id="AAH01187.1" /db_xref="GeneID:10987" /db_xref="HGNC:HGNC:2240" /db_xref="MIM:604850" /translation="MAASGSGMAQKTWELANNMQEAQSIDEIYKYDKKQQQEILAAKP WTKDHHYFKYCKISALALLKMVMHARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEG TETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQ FQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGYKPPDEGPSEYQTIPLNKIEDFGVHC KQYYALEVSYFKSSLDRKLLELLWNKYWVNTLSSSSLLTNADYTTGQVFDLSEKLEQS EAQLGRGSFMLGLETHDRKSEDKLAKATRDSCKTTIEAIHGLMSQVIKDKLFNQINIS " BASE COUNT 413 a 259 c 310 g 327 t ORIGIN 1 gtgtcatggc tgccccaaga gtctaggtaa gagtttgttc ccgtggtgcg gagggtcaag 61 gcccacaccc ggaaacctag cgaggtaaag ttgcgtcttg gttgtagaga cgacaacttc 121 tccgcttcct cggcgatggc ggcgtccggg agcggtatgg cccagaaaac ctgggaactg 181 gccaacaaca tgcaggaagc tcagagtatc gatgaaatct acaaatacga caagaaacag 241 cagcaagaaa tcctggcggc gaagccctgg actaaggatc accattactt taagtactgc 301 aaaatctcag cattggctct gctgaagatg gtgatgcatg ccagatcggg aggcaacttg 361 gaagtgatgg gtctgatgct aggaaaggtg gatggtgaaa ccatgatcat tatggacagt 421 tttgctttgc ctgtggaggg cactgaaacc cgagtaaatg ctcaggctgc tgcatatgaa 481 tacatggctg catacataga aaatgcaaaa caggttggcc gccttgaaaa tgcaatcggg 541 tggtatcata gccaccctgg ctatggctgc tggctttctg ggattgatgt tagtactcag 601 atgctcaatc agcagttcca ggaaccattt gtagcagtgg tgattgatcc aacaagaaca 661 atatccgcag ggaaagtgaa tcttggcgcc tttaggacat acccaaaggg ctacaaacct 721 cctgatgaag gaccttctga gtaccagact attccactta ataaaataga agattttggt 781 gtacactgca aacaatatta tgccttagaa gtctcatatt tcaaatcctc tttggatcgc 841 aaattgcttg agctgttgtg gaataaatac tgggtgaata cgttgagttc ttctagcttg 901 cttactaatg cagactatac cactggtcag gtctttgatt tgtctgaaaa gttagagcag 961 tcagaagccc agctgggacg agggagtttc atgttgggtt tagaaacgca tgaccgaaaa 1021 tcagaagaca aacttgccaa agctacaaga gacagctgta aaactaccat agaagctatc 1081 catggattga tgtctcaggt tattaaggat aaactgttta atcaaattaa catctcttaa 1141 acagtctctg agaagtactt tacctgaaag acagtatgag aaaaatattc aagtaacact 1201 ttaaaaccag ttacccaaaa tctgattaga agtataaggt gctctgaagt gtcctaaata 1261 ttaatatcct gtaataaagc tctttaaaat gaaaaaaaaa aaaaaaaaa //