LOCUS BC001177 920 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens U2 small nuclear RNA auxiliary factor 1, mRNA (cDNA
clone MGC:2223 IMAGE:3534272), complete cds.
ACCESSION BC001177
VERSION BC001177.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 920)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 920)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-DEC-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 8 Row: a Column: 17.
FEATURES Location/Qualifiers
source 1..920
/db_xref="H-InvDB:HIT000030198"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:2223 IMAGE:3534272"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..920
/gene="U2AF1"
/gene_synonym="FP793"
/gene_synonym="RN"
/gene_synonym="RNU2AF1"
/gene_synonym="U2AF35"
/db_xref="GeneID:7307"
/db_xref="HGNC:HGNC:12453"
/db_xref="MIM:191317"
CDS 29..751
/gene="U2AF1"
/gene_synonym="FP793"
/gene_synonym="RN"
/gene_synonym="RNU2AF1"
/gene_synonym="U2AF35"
/codon_start=1
/product="U2 small nuclear RNA auxiliary factor 1"
/protein_id="AAH01177.1"
/db_xref="GeneID:7307"
/db_xref="HGNC:HGNC:12453"
/db_xref="MIM:191317"
/translation="MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQ
TIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVC
DNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEM
GECTRGGFCNFMHLKPISRELRRELYGRRRKKHRSRSRSRERRSRSRDRGRGGGGGGG
GGGGGRERDRRRSRDRERSGRF"
BASE COUNT 256 a 183 c 273 g 208 t
ORIGIN
1 cgacggcagc ggcggcggcg ggtgggaaat ggcggagtat ctggcctcca tcttcggcac
61 cgagaaagac aaagtcaact gttcatttta tttcaaaatt ggagcatgtc gtcatggaga
121 caggtgctct cggttgcaca ataaaccgac gtttagccag accattgccc tcttgaacat
181 ttaccgtaac cctcaaaact cttcccagtc tgctgacggt ttgcgctgtg ccgtgagcga
241 tgtggagatg caggaacact atgatgagtt ttttgaggag gtttttacag aaatggagga
301 gaagtatggg gaagtagagg agatgaacgt ctgtgacaac ctgggagacc acctggtggg
361 gaacgtgtac gtcaagtttc gccgtgagga agatgcggaa aaggctgtga ttgacttgaa
421 taaccgttgg tttaatggac agccgatcca cgccgagctg tcacccgtga cggacttcag
481 agaagcctgc tgccgtcagt atgagatggg agaatgcaca cgaggcggct tctgcaactt
541 catgcatttg aagcccattt ccagagagct gcggcgggag ctgtatggcc gccgtcgcaa
601 gaagcataga tcaagatccc gatcccggga gcgtcgttct cggtctagag accgtggtcg
661 tggcggtggc ggtggcggtg gtggaggtgg cggcggacgg gagcgtgaca ggaggcggtc
721 gagagatcgt gaaagatctg ggcgattctg agccatgcca tttttacctt atgtctgcta
781 gaaagtgttg tagttgattg accaaaccag ttcataaggg gaattttttt taaaaaacaa
841 caaaaaaaaa aaacatacaa agatgggttt ctgaataaaa tttgtagtga taacagtaaa
901 aaaaaaaaaa aaaaaaaaaa
//